TCONS_00043186 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043186
Unique NameTCONS_00043186
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length616

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043186 ID=TCONS_00043186|Name=TCONS_00043186|organism=Clytia hemisphaerica|type=transcript|length=616bp
CTGAAAGTATCATTTTGatgtttattcaataaattcattTTGAATTGTTA
TAAGCATCTCTGTATCCAAATGGGTCTATTAAACCCCgttccaaaagtta
aaaaaattatctaaaataatctttccaacggtgtataactgTTTTTTATA
GCATATATacgcccctgtctcacagcccggtgaaactttttcctacagCG
AGAATAAAAATTGTGATGGTTCCAAGGTAAAATatccaatggggatggtt
ttggagtgcaattattAAACGTTGAGTTTTGAACGGGgacgaaatcaaag
tcaattgcTCAGTGTTGCTTAAATTctggggtatttttcccaccggggac
aaaaattttgccaaatcttccagtggggctggggcccCAGTGGGGCCGTG
ACACAAGGATGTATATATGGGTGCTGAGAAAAGCAAAGTGTCCAAATACT
TTTGGAACAAGTTTTCGTTCCTTCGCTACCTAGCAGAGGTTAAACCTTCC
TTGAATTGAAGAAACTCTTGCGGGACGAATCAGGCCGTTATCTTTAATTT
CAAAGTTTGgtgaaaaataattcagctATTTTGGCAATTGTGTTCTTTTC
TAATCGGACAGATATG
Run BLAST on NCBI

transcript from alignment at sc0003983:7420..8035

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043186 ID=TCONS_00043186|Name=TCONS_00043186|organism=Clytia hemisphaerica|type=transcript|length=616bp|location=Sequence derived from alignment at sc0003983:7420..8035 (Clytia hemisphaerica)
CATATCTGTCCGATTAGAAAAGAACACAATTGCCAAAATagctgaattat
ttttcacCAAACTTTGAAATTAAAGATAACGGCCTGATTCGTCCCGCAAG
AGTTTCTTCAATTCAAGGAAGGTTTAACCTCTGCTAGGTAGCGAAGGAAC
GAAAACTTGTTCCAAAAGTATTTGGACACTTTGCTTTTCTCAGCACCCAT
ATATACATCCTTGTGTCACGGCCCCACTGgggccccagccccactggaag
atttggcaaaatttttgtccccggtgggaaaaataccccagAATTTAAGC
AACACTGAgcaattgactttgatttcgtcCCCGTTCAAAACTCAACGTTT
aataattgcactccaaaaccatccccattggatATTTTACCTTGGAACCA
TCACAATTTTTATTCTCGctgtaggaaaaagtttcaccgggctgtgagac
aggggcgtATATATGCTATAAAAAAcagttatacaccgttggaaagatta
ttttagataatttttttaacttttggaacGGGGTTTAATAGACCCATTTG
GATACAGAGATGCTTATAACAATTCAAaatgaatttattgaataaacatC
AAAATGATACTTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026907XLOC_026907Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043186-exon-sc0003983-1491911889:7420..8035TCONS_00043186-exon-sc0003983-1491911889:7420..8035Clytia hemisphaericaexon
TCONS_00043186-exon-sc0003983-1510915933:7420..8035TCONS_00043186-exon-sc0003983-1510915933:7420..8035Clytia hemisphaericaexon
TCONS_00043186-exon-sc0003983-1575043694:7420..8035TCONS_00043186-exon-sc0003983-1575043694:7420..8035Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003983supercontigsc0003983:7420..8035 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.174338	0.0850034	0.197394	0	0.235104	0.371565	0	0.314754	0.146911	0.27296	0.441569	0.812756	0	0.0602058	0.19799	0	0	0.134142	0	0	0.337119	0	0	0.0908656	0	0.334105	0.358578	0.127561	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043186 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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