TCONS_00043265 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043265
Unique NameTCONS_00043265
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length508

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043265 ID=TCONS_00043265|Name=TCONS_00043265|organism=Clytia hemisphaerica|type=transcript|length=508bp
gtcaaattttcCGTGAGGTATCTCTACCGACCGGAGAGTATGACGACGTA
CGGTCGAGATATAGCTCTGAAAGCTCAGGAAATTTAAACAATCCTTACCG
GCAGATGACCATCTCATACCAACACCTTGAATACCAGGAGCTGAAACGGC
ACAGAAATAATTATCATGCCATGTGCCCGTTCGATCTGCACTCTCATGAA
TATGAGTACAAGTCATGCCATCAATTGCTCCAGCCGAATGCCATCGGAAC
TCTTCAGGCCATTTAGGATAACGGCATGCCGAAGTTGTTGCAATGAAAGC
CAAAGATATGAGGATGATATGATTGATCTTCATTGTCTTCAGTGAATACT
TTCAGTCAGGTTGTTTCTTGCTTTGACCTCTTCTACTTTCTTCTTccaaa
tgatttttcgaatgaCTTTAAAGCTTCATATTTGCACTATTTATACCTTT
AGcattacgtcatttttgaaaaaattttcgtcgCAAACACCCGTGCGTTG
CAAGAGCG
Run BLAST on NCBI

protein sequence of TCONS_00043265-protein

>TCONS_00043265-protein ID=TCONS_00043265-protein|Name=TCONS_00043265-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MKINHIILISLAFIATTSACRYPKWPEEFRWHSAGAIDGMTCTHIHESAD
RTGTWHDNYFCAVSAPGIQGVGMRWSSAGKDCLNFLSFQSYISTVRRHTL
RSVEIPHGKFD
Run BLAST on NCBI

transcript from alignment at sc0004076:7604..8111

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043265 ID=TCONS_00043265|Name=TCONS_00043265|organism=Clytia hemisphaerica|type=transcript|length=508bp|location=Sequence derived from alignment at sc0004076:7604..8111 (Clytia hemisphaerica)
CGCTCTTGCAACGCACGGGTGTTTGcgacgaaaattttttcaaaaatgac
gtaatgCTAAAGGTATAAATAGTGCAAATATGAAGCTTTAAAGtcattcg
aaaaatcatttggAAGAAGAAAGTAGAAGAGGTCAAAGCAAGAAACAACC
TGACTGAAAGTATTCACTGAAGACAATGAAGATCAATCATATCATCCTCA
TATCTTTGGCTTTCATTGCAACAACTTCGGCATGCCGTTATCCTAAATGG
CCTGAAGAGTTCCGATGGCATTCGGCTGGAGCAATTGATGGCATGACTTG
TACTCATATTCATGAGAGTGCAGATCGAACGGGCACATGGCATGATAATT
ATTTCTGTGCCGTTTCAGCTCCTGGTATTCAAGGTGTTGGTATGAGATGG
TCATCTGCCGGTAAGGATTGTTTAAATTTCCTGAGCTTTCAGAGCTATAT
CTCGACCGTACGTCGTCATACTCTCCGGTCGGTAGAGATACCTCACGgaa
aatttgac

Coding sequence (CDS) from alignment at sc0004076:7604..8111

>TCONS_00043265 ID=TCONS_00043265|Name=TCONS_00043265|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at sc0004076:7604..8111 (Clytia hemisphaerica)
ATGAAGATCAATCATATCATCCTCATATCTTTGGCTTTCATTGCAACAAC
TTCGGCATGCCGTTATCCTAAATGGCCTGAAGAGTTCCGATGGCATTCGG
CTGGAGCAATTGATGGCATGACTTGTACTCATATTCATGAGAGTGCAGAT
CGAACGGGCACATGGCATGATAATTATTTCTGTGCCGTTTCAGCTCCTGG
TATTCAAGGTGTTGGTATGAGATGGTCATCTGCCGGTAAGGATTGTTTAA
ATTTCCTGAGCTTTCAGAGCTATATCTCGACCGTACGTCGTCATACTCTC
CGGTCGGTAGAGATACCTCACGgaaaatttgac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026978XLOC_026978Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043265-exon-sc0004076-1491911889:7604..8111TCONS_00043265-exon-sc0004076-1491911889:7604..8111Clytia hemisphaericaexon
TCONS_00043265-exon-sc0004076-1510915933:7604..8111TCONS_00043265-exon-sc0004076-1510915933:7604..8111Clytia hemisphaericaexon
TCONS_00043265-exon-sc0004076-1575043694:7604..8111TCONS_00043265-exon-sc0004076-1575043694:7604..8111Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043265-proteinTCONS_00043265-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004076supercontigsc0004076:7604..8111 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.118655	0	0	0	0.241556	0.172041	0	0.239184	0	0	0	0	82.6718	90.1753	9.51675	6.33918	2.28004	3.8132	803.249	677.495	46.1183	42.4717	14.5418	11.7992	0.92502	1.66446	4.41335	7.19804	41.7472	55.0133
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043265 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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