TCONS_00043270 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043270
Unique NameTCONS_00043270
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length457

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043270 ID=TCONS_00043270|Name=TCONS_00043270|organism=Clytia hemisphaerica|type=transcript|length=457bp
ATCATTCAAAATAAGTGATGAATCAAATGGTATACTGCCCAACATACTAT
CGCTGAGAGTCGTTACTTCACTTCAGTGCTCTTGCTTGTTGTGTTGACAT
TTGTTTCCAGGTgtggattttgattttcattctGTACGTGTTTATTGTTT
GTGATGAATAAGTCGAGTTTTCTCTCAACATTGATTAAGTGTCTTTTGAG
GTCAGCATTTTCTTCACGCAGTTGTTTGTTGTCAGCAAGAACTTCATGCA
TTGTTTGAATCAGTAAAGTAATGTCTGAGCAGAACTCTGAAGCTGGATAA
GTTCACTGGTAATAATTTCTTTTGGCAGATTGTATATCTCTTCTATGTTT
GCCATAAAAGGAGTCGATGGTTCCCTATGGTTTTCTTTGATGTCCATGAA
TAGTGATGAAATATTAAAGTCAGTGTTTTCTTCTTCTggtacgccatttt
gaatttg
Run BLAST on NCBI

transcript from alignment at sc0004081:5057..5513

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043270 ID=TCONS_00043270|Name=TCONS_00043270|organism=Clytia hemisphaerica|type=transcript|length=457bp|location=Sequence derived from alignment at sc0004081:5057..5513 (Clytia hemisphaerica)
caaattcaaaatggcgtaccAGAAGAAGAAAACACTGACTTTAATATTTC
ATCACTATTCATGGACATCAAAGAAAACCATAGGGAACCATCGACTCCTT
TTATGGCAAACATAGAAGAGATATACAATCTGCCAAAAGAAATTATTACC
AGTGAACTTATCCAGCTTCAGAGTTCTGCTCAGACATTACTTTACTGATT
CAAACAATGCATGAAGTTCTTGCTGACAACAAACAACTGCGTGAAGAAAA
TGCTGACCTCAAAAGACACTTAATCAATGTTGAGAGAAAACTCGACTTAT
TCATCACAAACAATAAACACGTACagaatgaaaatcaaaatccacACCTG
GAAACAAATGTCAACACAACAAGCAAGAGCACTGAAGTGAAGTAACGACT
CTCAGCGATAGTATGTTGGGCAGTATACCATTTGATTCATCACTTATTTT
GAATGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026983XLOC_026983Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043270-exon-sc0004081-1491911889:5057..5513TCONS_00043270-exon-sc0004081-1491911889:5057..5513Clytia hemisphaericaexon
TCONS_00043270-exon-sc0004081-1510915933:5057..5513TCONS_00043270-exon-sc0004081-1510915933:5057..5513Clytia hemisphaericaexon
TCONS_00043270-exon-sc0004081-1575043694:5057..5513TCONS_00043270-exon-sc0004081-1575043694:5057..5513Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004081supercontigsc0004081:5057..5513 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.429166	0	0.161975	0.158467	1.92918	1.06713	1.65528	1.89402	0.4822	0.447962	0.289869	0.476371	0.951417	0.395222	0	0.261522	1.39609	0.770507	0	0.318263	0.553256	0.404789	0.164025	0.447366	0	2.33032	0	0	0	0.323544
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043270 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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