TCONS_00043279 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043279
Unique NameTCONS_00043279
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length687

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043279 ID=TCONS_00043279|Name=TCONS_00043279|organism=Clytia hemisphaerica|type=transcript|length=687bp
TTCGGTGAAGAATGCTGTGCATGGATTAAaCTGAAACGAGGTTCAGAGAC
AACTGAAGAAGATATCAAACAATTCTGTAAAGGACAGATTTCACATTACA
AGATTCCAAGATATATCGAGTTTGTTGATGAATACCCCATGACTGTCACT
GGCAAGatcAAGAAGAACGAAATTCGTCAacaaatgaaagtgaaaatggg
CTTGGAATAATTTTGATGAATTGGTTCTATATAAGGGGAAATCACTTTGG
CAGTGTCTTTTTAAGCTTACTTTTGTTCCTTTGATAAAAAAGCAGATATT
GAATGAGTAAGGATCTTTTGTGTTGATTATAGGGGGTTATTATAGGGTAT
AAAAAACGTTAGAATATGATTTAGATAttaaagaaatgtaattttgtAAT
TTAGTAGATATATAGTATAATTTAGCAAAGAATTTTATTATCCAggtttt
agttttttattttctatgatgaatattttttatcattttttgataatatt
ttcaaggtaataattttttgtacacgttttttatagcACAGTCACACGTT
ATCCCTATATACTTTTTGgggtttaaaatgaaaatacaatatATTATCGC
TGAGAACTATTCAAAAttgttcataaaaaactttttggttCAAATGTACT
CATCGTCAAGTCAGGGCAAAAAAACATACTGCTGTCG
Run BLAST on NCBI

transcript from alignment at sc0004087:5860..7274+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043279 ID=TCONS_00043279|Name=TCONS_00043279|organism=Clytia hemisphaerica|type=transcript|length=1415bp|location=Sequence derived from alignment at sc0004087:5860..7274+ (Clytia hemisphaerica)
TTCGGTGAAGAATGCTGTGCATGGATTAAgtaattttcatatttcaaatt
cGCATATCAAATTTTTCCAGCCTAATATTTAATAGGAGCtgatatttctt
ttgatttggaTTTCGCGACGCTAAAAACTGAAATTATGTTCAGATATTTC
CCTCTaattttcaaattcttattatttaaatggtattcaaattctttcaa
atattatttttcagaCTGAAACGAGGTTCAGAGACAACTGAAGAAGATAT
CAAACAATTCTGTAAAGGACAGGTATCCAACAATCTTGATATCAGATGGT
TTGCTTTatcgtttttttattatttcaccGTTTTTTGAATATTGCCATGT
TTNATATCAGatggtttttttattatttcaccGTTTTTTGAATATTGCCA
tgttttataaatgaaaaaaaggaaTTGTTTTGATTACATTTTTAAATCAA
GACGAAATAATAATACCCTTACTATGTTATTGATAAGGCACTGAGAATTT
ATACAGTACATCTTCTTTATATTCTAGATTTCACATTACAAGATTCCAAG
ATATATCGAGTTTGTTGATGAATACCCCATGACTGTCACTGGCAAGGTAT
GGAACTTTGTTatagttttgaaataatcaCCATCTTTCTAGAATTAATGT
TGTTTGGCTCATAATAGACTGATGTGAGTTCTCCAATTTTCTATGACTCT
AAAATGTTCCAAGCTTCCCTACCTACCTTCTTTGGGATTGACTGATATTG
TTAAAAGGCGGAGAGTAAGGTCTTTTTTTAGGTGAAAATAgaaatttagt
aaaatttcaaacttttaaatctaaatttatTCCAGTAGCTGTTGAAAGCA
ACTGATTctttaggctacgtcatatttttttcagatcAAGAAGAACGAAA
TTCGTCAacaaatgaaagtgaaaatgggCTTGGAATAATTTTGATGAATT
GGTTCTATATAAGGGGAAATCACTTTGGCAGTGTCTTTTTAAGCTTACTT
TTGTTCCTTTGATAAAAAAGCAGATATTGAATGAGTAAGGATCTTTTGTG
TTGATTATAGGGGGTTATTATAGGGTATAAAAAACGTTAGAATATGATTT
AGATAttaaagaaatgtaattttgtAATTTAGTAGATATATAGTATAATT
TAGCAAAGAATTTTATTATCCAggttttagttttttattttctatgatga
atattttttatcattttttgataatattttcaaggtaataattttttgta
cacgttttttatagcACAGTCACACGTTATCCCTATATACTTTTTGgggt
ttaaaatgaaaatacaatatATTATCGCTGAGAACTATTCAAAAttgttc
ataaaaaactttttggttCAAATGTACTCATCGTCAAGTCAGGGCAAAAA
AACATACTGCTGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026991XLOC_026991Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043279-exon-sc0004087-1491911889:5860..5888TCONS_00043279-exon-sc0004087-1491911889:5860..5888Clytia hemisphaericaexon
TCONS_00043279-exon-sc0004087-1510915933:5860..5888TCONS_00043279-exon-sc0004087-1510915933:5860..5888Clytia hemisphaericaexon
TCONS_00043279-exon-sc0004087-1575043694:5860..5888TCONS_00043279-exon-sc0004087-1575043694:5860..5888Clytia hemisphaericaexon
TCONS_00043279-exon-sc0004087-1491911889:6074..6131TCONS_00043279-exon-sc0004087-1491911889:6074..6131Clytia hemisphaericaexon
TCONS_00043279-exon-sc0004087-1510915933:6074..6131TCONS_00043279-exon-sc0004087-1510915933:6074..6131Clytia hemisphaericaexon
TCONS_00043279-exon-sc0004087-1575043694:6074..6131TCONS_00043279-exon-sc0004087-1575043694:6074..6131Clytia hemisphaericaexon
TCONS_00043279-exon-sc0004087-1491911889:6387..6455TCONS_00043279-exon-sc0004087-1491911889:6387..6455Clytia hemisphaericaexon
TCONS_00043279-exon-sc0004087-1510915933:6387..6455TCONS_00043279-exon-sc0004087-1510915933:6387..6455Clytia hemisphaericaexon
TCONS_00043279-exon-sc0004087-1575043694:6387..6455TCONS_00043279-exon-sc0004087-1575043694:6387..6455Clytia hemisphaericaexon
TCONS_00043279-exon-sc0004087-1491911889:6744..7274TCONS_00043279-exon-sc0004087-1491911889:6744..7274Clytia hemisphaericaexon
TCONS_00043279-exon-sc0004087-1510915933:6744..7274TCONS_00043279-exon-sc0004087-1510915933:6744..7274Clytia hemisphaericaexon
TCONS_00043279-exon-sc0004087-1575043694:6744..7274TCONS_00043279-exon-sc0004087-1575043694:6744..7274Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004087supercontigsc0004087:5860..7274 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.261957	0	0
Blast
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BLAST of TCONS_00043279 vs. Swiss-Prot (Human)
Match: ACSF2 (Acyl-CoA synthetase family member 2, mitochondrial OS=Homo sapiens GN=ACSF2 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 6.721e-20
Identity = 40/68 (58.82%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    1 FGEECCAWIKLKRGSETTEEDIKQFCKGQISHYKIPRYIEFVDEYPMTVTGKIKKNEIRQQMKVKMGL 204
             GEE CA I+LK G ETT E+IK FCKG+ISH+KIP+YI FV  YP+T++GKI+K ++R+QM+  + L
Sbjct:  548 MGEEICACIRLKDGEETTVEEIKAFCKGKISHFKIPKYIVFVTNYPLTISGKIQKFKLREQMERHLNL 615
The following BLAST results are available for this feature:
BLAST of TCONS_00043279 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACSF26.721e-2058.82Acyl-CoA synthetase family member 2, mitochondrial... [more]
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