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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043284 ID=TCONS_00043284|Name=TCONS_00043284|organism=Clytia hemisphaerica|type=transcript|length=425bp
tttcgcgaCATTTAGATGTATCGAACATACACATACATAGAACAAACACA
AAAATGATTAATGGTGGCGTAATGAATAACATTTTGACCCTATATTTCTT
CATCAATGTAATTCAATATGGCGAAACACAAATTTTACGAAGGGTGGATG
TAACCACTGTCAACAACAAAGttGAGTATGGCTACGTTAAAATGGTATCG
CACGATAATCACATTCTCAATGTGACAGCAATCAATATATCATACCACAA
AACTTCCCAAGAATGCATTCGAACTTGTCTCAATTTTACAAATTGTTGGA
GCATCAATTTGAAGGAGCAGCCAAATAATGAGATTTACGAATGTCATATT
TTGGATACTGATCGATTTCGAAACGCGTCAAATTATGTTTCTTCCTCTAT
AGgaaattctcatttttctctTGAT Run BLAST on NCBI protein sequence of TCONS_00043284-protein >TCONS_00043284-protein ID=TCONS_00043284-protein|Name=TCONS_00043284-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
SRHLDVSNIHIHRTNTKMINGGVMNNILTLYFFINVIQYGETQILRRVDV
TTVNNKVEYGYVKMVSHDNHILNVTAINISYHKTSQECIRTCLNFTNCWS
INLKEQPNNEIYECHILDTDRFRNASNYVSSSIGNSHFSLD Run BLAST on NCBI transcript from alignment at sc0004090:1328..2888- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043284 ID=TCONS_00043284|Name=TCONS_00043284|organism=Clytia hemisphaerica|type=transcript|length=1561bp|location=Sequence derived from alignment at sc0004090:1328..2888- (Clytia hemisphaerica)
TTTCGCGACATTTAGATGTATCGAACATACACATACATAGAACAAACACA
AAAATGATTAATGGTGGCGTAATGAATAACATTTTGACCCTATATTTCTT
CATCAATGTAATTCAATATGGCGAAACACAAATTTTACGAAGGGTGGATG
TAACCACTGTCAACAACAAAGGTGAAATACTTCGTTTATCTAACTTAATT
TTTATCTAGTCTTATACATTTGTGTTGTCTCTAGGTGCGTTAGTAAATAA
TTTTGAAAACCATACACGTTTTTTATAAGAACATCTAAATTTTTTGAAGC
CTTTGCATGTTCTTAAATTTTTGAGTTGTAAGTCTAAAAAAATATTCTTA
ACATATTCTTATTTTACCATTTTGTGAATATTTTTGTCCCGCATTTCCTT
AAAAAATGGGGTGTTTTGGAATCTGTAAAGCCTTAAAATGTTCTTAACTT
GTTCTTGATTTTTGATCATCGAAGCCTTATGTTTTTATATAGTTTTTTCT
TACATAAAAAAACGTGTAGTCCATGTAAAAAAAACATTGTCTGGGACCCC
TTTGTTTCTCTCCATTGGTTAACATCGAACACTATATGTTTTGTTTACAT
TGATAATTTGACCAATGCAAAGAAGATCAATAACTGTTCGAGTTGAATTT
TAATTCAACGCAATTTTAAGTTAGATACAATGGAAAGAAACAAAAGGCTT
TCAGACCCCAGATTTGTGAAAGGCTAAGGATAACTTTAAGCTTTCTCTAG
CAAAAAAAAATTGAAGCAAAGATTTGACTTTTTAAATTTCGTGCCGATGG
ATACGATCTTGTATTTTAATTGTTTTCGGAGCGCAAGATAAAAAAAGTAA
GCGGCAAACGCTATATTGCATCTCTCAAACCAGTGAAATTGCTTGTTGTC
ACGTGATTTCTTTGGAAGGAAATCCTACCAAAACTTGCTTCACTTTTCGA
TCTAGCCCTTCGGGCTTTACAGATCTGTGTTCCAGATTGGGGTTTTTTAT
ACGGACTAAAGAAAAGCTGGCTTATAATGCGACTACAACAAATATCTGAA
ATATCCACCACTCGATTTTTTATGATTAGCTCTCTCCGTATGTACCGTAA
CTGAAATATGAAATACATACCTATAGACGGTAAAAATTCATTTTAAACGA
AAAAATTCAAATCTTTTAAGCCTTGAACTTAAAGGCATGAACTTTAAGCG
ACCATAAGTCACATCAGCATACTTAGACTTATTCTCTTGATAGTGGTTTC
AAGAAAAACTGGAGCGTAATACTGTAACTGCATTAATGTAACTTTCTTTT
CTTTCAGTTGAGTATGGCTACGTTAAAATGGTATCGCACGATAATCACAT
TCTCAATGTGACAGCAATCAATATATCATACCACAAAACTTCCCAAGAAT
GCATTCGAACTTGTCTCAATTTTACAAATTGTTGGAGCATCAATTTGAAG
GAGCAGCCAAATAATGAGATTTACGAATGTCATATTTTGGATACTGATCG
ATTTCGAAACGCGTCAAATTATGTTTCTTCCTCTATAGGAAATTCTCATT
TTTCTCTTGAT Coding sequence (CDS) from alignment at sc0004090:1328..2888- >TCONS_00043284 ID=TCONS_00043284|Name=TCONS_00043284|organism=Clytia hemisphaerica|type=CDS|length=846bp|location=Sequence derived from alignment at sc0004090:1328..2888- (Clytia hemisphaerica)
TTGAGTATGGCTACGTTAAAATGGTATCGCACGATAATCACATTCTCAAT
GTGACAGCAATCAATATATCATACCACAAAACTTCCCAAGAATGCATTCG
AACTTGTCTCAATTTTACAAATTGTTGGAGCATCAATTTGAAGGAGCAGC
CAAATAATGAGATTTACGAATGTCATATTTTGGATACTGATCGATTTCGA
AACGCGTCAAATTATGTTTCTTCCTCTATAGGAAATTCTCATTTTTCTCT
TGATTCGCGACATTTAGATGTATCGAACATACACATACATAGAACAAACA
CAAAAATGATTAATGGTGGCGTAATGAATAACATTTTGACCCTATATTTC
TTCATCAATGTAATTCAATATGGCGAAACACAAATTTTACGAAGGGTGGA
TGTAACCACTGTCAACAACAAAGTTGAGTATGGCTACGTTAAAATGGTAT
CGCACGATAATCACATTCTCAATGTGACAGCAATCAATATATCATACCAC
AAAACTTCCCAAGAATGCATTCGAACTTGTCTCAATTTTACAAATTGTTG
GAGCATCAATTTGAAGGAGCAGCCAAATAATGAGATTTACGAATGTCATA
TTTTGGATACTGATCGATTTCGAAACGCGTCAAATTATGTTTCTTCCTCT
ATAGGAAATTCTCATTTTTCTCTTGATTCGCGACATTTAGATGTATCGAA
CATACACATACATAGAACAAACACAAAAATGATTAATGGTGGCGTAATGA
ATAACATTTTGACCCTATATTTCTTCATCAATGTAATTCAATATGGCGAA
ACACAAATTTTACGAAGGGTGGATGTAACCACTGTCAACAACAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043284-exon-sc0004090-1575043694:2718..2888 | TCONS_00043284-exon-sc0004090-1575043694:2718..2888 | Clytia hemisphaerica | exon |
| TCONS_00043284-exon-sc0004090-1575043694:1328..1581 | TCONS_00043284-exon-sc0004090-1575043694:1328..1581 | Clytia hemisphaerica | exon |
| TCONS_00043284-exon-sc0004090-1510915933:2718..2888 | TCONS_00043284-exon-sc0004090-1510915933:2718..2888 | Clytia hemisphaerica | exon |
| TCONS_00043284-exon-sc0004090-1510915933:1328..1581 | TCONS_00043284-exon-sc0004090-1510915933:1328..1581 | Clytia hemisphaerica | exon |
| TCONS_00043284-exon-sc0004090-1491911889:2718..2888 | TCONS_00043284-exon-sc0004090-1491911889:2718..2888 | Clytia hemisphaerica | exon |
| TCONS_00043284-exon-sc0004090-1491911889:1328..1581 | TCONS_00043284-exon-sc0004090-1491911889:1328..1581 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004090 | supercontig | sc0004090:1328..2888 - |
Blast
The following BLAST results are available for this feature:
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