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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043316 ID=TCONS_00043316|Name=TCONS_00043316|organism=Clytia hemisphaerica|type=transcript|length=1057bp
ACTGTTTCGTGTTTCGTGTTGACATCGTGGCTTGTTGGTTTGTTGCAGTT
CGCTTGTACTTTCTTCCAAATTATTGGGTAAGACAGAGCTCTCCAAATCT
TTTTAGTTCCTTGCATATTAGtcattttaaaaacgaaaaGATAGCAGCAA
GTGTACACTGGTTAATTAACCTCACTTGTTGGTTATCAATAAAAGATAGC
ATAAGCTTGTCTGTGTTATATATCAGACAAGCAGCTACACCCTGGGAGGT
TGCATGCGAGCTCCTTGCATCCTCTTGTTTAACTTACTTAACTTACTTAA
CTTGCTAAACCTGCAAAACCTACACAACCGGCAAAACCTACACAACCTAC
ACAACCTGAAAAACCTACACAACCTGCATAACTTGCACAACCTACATAAT
CTGTCATTTGTTCTAGTTAATTTTGAAAGCATCAACCTAACATTCAACGA
AAACTTAGCAATTCAAAATACTAGCAAGCGTCCCAAAATGCCAGCGTATC
AAGTTTCAAAGGCTGTTTTAGGTTCATTTAACCAAGCAAATGAGGACTTG
TTTGGCAATACAGCTGGAACACAATGTAGTGTAAATTGTCTGTATGCtct
tttttggtcaaattttcgaCACGTTTCTAATTGGAAGACAACAGACCTTG
ACAAAATCTTAATTGAAGGAGATAAGTTGTACAAACAATTAAACACTAAT
TGTTATCTTTCTGTTGATGAAATGCCGCGATTCATCGAAACAGATGGCAT
TGTAACtgacatcaattttttgaattttacgaaTGGTGAAGCTAAACTTA
TTGATGGTTATCCAATACTTCGTATCCCTTTTAGTTCTTCTGAAAATCTA
GATTTCAATGCATTAATGATTATTAAAAATTTCACTATAGCAATTATGAG
TCGAACTCAAGGCTATTTCATCTTTGACTCTCATAGTCGAAATGAACGTG
GTCTGCTTCAACCACTAAATGGAAAGTCGTGTctattaaaatttgataat
attttcgaacttgaaaaatatatccaatgtttttatttagtAGAAATGGA
AAATGAG Run BLAST on NCBI protein sequence of TCONS_00043316-protein >TCONS_00043316-protein ID=TCONS_00043316-protein|Name=TCONS_00043316-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
MRAPCILLFNLLNLLNLLNLQNLHNRQNLHNLHNLKNLHNLHNLHNLHNL
SFVLVNFESINLTFNENLAIQNTSKRPKMPAYQVSKAVLGSFNQANEDLF
GNTAGTQCSVNCLYALFWSNFRHVSNWKTTDLDKILIEGDKLYKQLNTNC
YLSVDEMPRFIETDGIVTDINFLNFTNGEAKLIDGYPILRIPFSSSENLD
FNALMIIKNFTIAIMSRTQGYFIFDSHSRNERGLLQPLNGKSCLLKFDNI
FELEKYIQCFYLVEMENE Run BLAST on NCBI transcript from alignment at sc0004118:461..1517 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043316 ID=TCONS_00043316|Name=TCONS_00043316|organism=Clytia hemisphaerica|type=transcript|length=1057bp|location=Sequence derived from alignment at sc0004118:461..1517 (Clytia hemisphaerica)
CTCATTTTCCATTTCTactaaataaaaacattggatatatttttcaagtt
cgaaaatattatcaaattttaatagACACGACTTTCCATTTAGTGGTTGA
AGCAGACCACGTTCATTTCGACTATGAGAGTCAAAGATGAAATAGCCTTG
AGTTCGACTCATAATTGCTATAGTGAAATTTTTAATAATCATTAATGCAT
TGAAATCTAGATTTTCAGAAGAACTAAAAGGGATACGAAGTATTGGATAA
CCATCAATAAGTTTAGCTTCACCAttcgtaaaattcaaaaaattgatgtc
aGTTACAATGCCATCTGTTTCGATGAATCGCGGCATTTCATCAACAGAAA
GATAACAATTAGTGTTTAATTGTTTGTACAACTTATCTCCTTCAATTAAG
ATTTTGTCAAGGTCTGTTGTCTTCCAATTAGAAACGTGtcgaaaatttga
ccaaaaaagaGCATACAGACAATTTACACTACATTGTGTTCCAGCTGTAT
TGCCAAACAAGTCCTCATTTGCTTGGTTAAATGAACCTAAAACAGCCTTT
GAAACTTGATACGCTGGCATTTTGGGACGCTTGCTAGTATTTTGAATTGC
TAAGTTTTCGTTGAATGTTAGGTTGATGCTTTCAAAATTAACTAGAACAA
ATGACAGATTATGTAGGTTGTGCAAGTTATGCAGGTTGTGTAGGTTTTTC
AGGTTGTGTAGGTTGTGTAGGTTTTGCCGGTTGTGTAGGTTTTGCAGGTT
TAGCAAGTTAAGTAAGTTAAGTAAGTTAAACAAGAGGATGCAAGGAGCTC
GCATGCAACCTCCCAGGGTGTAGCTGCTTGTCTGATATATAACACAGACA
AGCTTATGCTATCTTTTATTGATAACCAACAAGTGAGGTTAATTAACCAG
TGTACACTTGCTGCTATCttttcgtttttaaaatgaCTAATATGCAAGGA
ACTAAAAAGATTTGGAGAGCTCTGTCTTACCCAATAATTTGGAAGAAAGT
ACAAGCGAACTGCAACAAACCAACAAGCCACGATGTCAACACGAAACACG
AAACAGT Coding sequence (CDS) from alignment at sc0004118:461..1517 >TCONS_00043316 ID=TCONS_00043316|Name=TCONS_00043316|organism=Clytia hemisphaerica|type=CDS|length=804bp|location=Sequence derived from alignment at sc0004118:461..1517 (Clytia hemisphaerica)
CTCATTTTCCATTTCTactaaataaaaacattggatatatttttcaagtt
cgaaaatattatcaaattttaatagACACGACTTTCCATTTAGTGGTTGA
AGCAGACCACGTTCATTTCGACTATGAGAGTCAAAGATGAAATAGCCTTG
AGTTCGACTCATAATTGCTATAGTGAAATTTTTAATAATCATTAATGCAT
TGAAATCTAGATTTTCAGAAGAACTAAAAGGGATACGAAGTATTGGATAA
CCATCAATAAGTTTAGCTTCACCAttcgtaaaattcaaaaaattgatgtc
aGTTACAATGCCATCTGTTTCGATGAATCGCGGCATTTCATCAACAGAAA
GATAACAATTAGTGTTTAATTGTTTGTACAACTTATCTCCTTCAATTAAG
ATTTTGTCAAGGTCTGTTGTCTTCCAATTAGAAACGTGtcgaaaatttga
ccaaaaaagaGCATACAGACAATTTACACTACATTGTGTTCCAGCTGTAT
TGCCAAACAAGTCCTCATTTGCTTGGTTAAATGAACCTAAAACAGCCTTT
GAAACTTGATACGCTGGCATTTTGGGACGCTTGCTAGTATTTTGAATTGC
TAAGTTTTCGTTGAATGTTAGGTTGATGCTTTCAAAATTAACTAGAACAA
ATGACAGATTATGTAGGTTGTGCAAGTTATGCAGGTTGTGTAGGTTTTTC
AGGTTGTGTAGGTTGTGTAGGTTTTGCCGGTTGTGTAGGTTTTGCAGGTT
TAGCAAGTTAAGTAAGTTAAGTAAGTTAAACAAGAGGATGCAAGGAGCTC
GCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043316-exon-sc0004118-1491911889:461..1517 | TCONS_00043316-exon-sc0004118-1491911889:461..1517 | Clytia hemisphaerica | exon |
| TCONS_00043316-exon-sc0004118-1510915933:461..1517 | TCONS_00043316-exon-sc0004118-1510915933:461..1517 | Clytia hemisphaerica | exon |
| TCONS_00043316-exon-sc0004118-1575043694:461..1517 | TCONS_00043316-exon-sc0004118-1575043694:461..1517 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004118 | supercontig | sc0004118:461..1517 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006928 | htUSP_central_domain |
Blast
The following BLAST results are available for this feature:
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