TCONS_00043362 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043362
Unique NameTCONS_00043362
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length228

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043362 ID=TCONS_00043362|Name=TCONS_00043362|organism=Clytia hemisphaerica|type=transcript|length=228bp
TCTTATGAAGAAAACAGCAACCATTTATTTTCATTCTGATTCTGCTTTCC
AGTCAGTCATCTTCTAAAAGGTTTTTCCTCTCTTTGACATTTATCTTGTA
AACATCGCAATTACACGAAATAAACATgaactggcacaatttatattcag
caggaccATTTTAAATAATTCTCCATCAGtcacaatctgttcatacagtc
ataatgctatgtatattttggttttata
Run BLAST on NCBI

transcript from alignment at sc0004156:6422..6649

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043362 ID=TCONS_00043362|Name=TCONS_00043362|organism=Clytia hemisphaerica|type=transcript|length=228bp|location=Sequence derived from alignment at sc0004156:6422..6649 (Clytia hemisphaerica)
tataaaaccaaaatatacatagcattatgactgtatgaacagattgtgaC
TGATGGAGAATTATTTAAAATggtcctgctgaatataaattgtgccagtt
cATGTTTATTTCGTGTAATTGCGATGTTTACAAGATAAATGTCAAAGAGA
GGAAAAACCTTTTAGAAGATGACTGACTGGAAAGCAGAATCAGAATGAAA
ATAAATGGTTGCTGTTTTCTTCATAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027067XLOC_027067Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043362-exon-sc0004156-1491911889:6422..6649TCONS_00043362-exon-sc0004156-1491911889:6422..6649Clytia hemisphaericaexon
TCONS_00043362-exon-sc0004156-1510915933:6422..6649TCONS_00043362-exon-sc0004156-1510915933:6422..6649Clytia hemisphaericaexon
TCONS_00043362-exon-sc0004156-1575043694:6422..6649TCONS_00043362-exon-sc0004156-1575043694:6422..6649Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004156supercontigsc0004156:6422..6649 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.9958	8.50749	1.23475	3.62403	1.47064	2.32423	0	2.62516	11.0276	14.7978	17.6776	17.4308	23.9341	11.2981	11.7655	13.9553	6.54924	16.7819	23.1851	24.2615	22.1421	18.5145	20.006	20.4619	1.17085	0	35.8879	15.9586	16.9456	14.7985
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043362 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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