TCONS_00043372 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043372
Unique NameTCONS_00043372
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length676

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043372 ID=TCONS_00043372|Name=TCONS_00043372|organism=Clytia hemisphaerica|type=transcript|length=676bp
GTTTATTGGTCAAAGAAATGATGATAACGTGTATTCTTTTGAGAGTGATA
TTGCTATTGACAACATCAACTTGAATGAAGGAAACTGTTCTGGGCCAATT
GACGGACGTTACACTGAATGGTCATCTTGGGGTATGTGTGACCAAGCCTG
TGGAATGGGCAAACAAAATAGGACGAGATATTGCACAAACCCTGCACCAA
TGAACGGTGGCAGTTGGTGCATGGGGGAGCACATGCAAAACCAAACTTGT
AAAATCAAAGATTGCGATCGTAATGGAGAATGGTCTGCTTGGACTGAATG
GGGACCATGCGACAAATCTTGTGGCGGTGGAAACAAGACACGCTACCGAG
AGTGCCACAACCCACCACCCATGGGAAACGGTCTACAATGTCTGTTGAAT
GGAAGCTCCACTGAACGAAGTATGATCGATATGGATGTACAAACGTGCAA
TGACATCATCTGTGACCGTGATGGTGGTTGGAATGCATGGGCCGTTGCTG
TTGAATGCTCTGTAGAATGTGGTAATGGAACTAAAGTTTCCCTTAGAAAC
TGCACCAACCCTGTCCCTCTTGGAGGAGGTAAACAATGCCCTATGGAAAA
GAAATTATACAATCTGACCATGTATGCTTTACAAGATAGAAGAGAGGAAC
CATGTTATGCTGGAGAATGTCTTACA
Run BLAST on NCBI

protein sequence of TCONS_00043372-protein

>TCONS_00043372-protein ID=TCONS_00043372-protein|Name=TCONS_00043372-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
FIGQRNDDNVYSFESDIAIDNINLNEGNCSGPIDGRYTEWSSWGMCDQAC
GMGKQNRTRYCTNPAPMNGGSWCMGEHMQNQTCKIKDCDRNGEWSAWTEW
GPCDKSCGGGNKTRYRECHNPPPMGNGLQCLLNGSSTERSMIDMDVQTCN
DIICDRDGGWNAWAVAVECSVECGNGTKVSLRNCTNPVPLGGGKQCPMEK
KLYNLTMYALQDRREEPCYAGECLT
Run BLAST on NCBI

transcript from alignment at sc0004167:4128..5407+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043372 ID=TCONS_00043372|Name=TCONS_00043372|organism=Clytia hemisphaerica|type=transcript|length=1280bp|location=Sequence derived from alignment at sc0004167:4128..5407+ (Clytia hemisphaerica)
GTTTATTGGTCAAAGAAATGATGATAACGTGTATTCTTTTGAGAGTGATA
TTGCTATTGACAACATCAACTTGAATGAAGGAAACTGTTCTGGGCCAAGT
ATGTTTATCATTGTGTTTTTAAGAACCCGAAAGAAATTCAATCCGAGATT
TTGATTGCCTTAACGcttattttctgaaagaaagactaaaattttacatt
tttagttCTCAATTGTATATATATTCTTTTGctttataaaattaaaatgc
CTTCTCGCCACCGAGTTAAAATCCAATGGTTTAAAACTCTGAGAACTCTC
TTTTAGTTGACGGACGTTACACTGAATGGTCATCTTGGGGTATGTGTGAC
CAAGCCTGTGGAATGGGCAAACAAAATAGGACGAGATATTGCACAAACCC
TGCACCAATGAACGGTGGCAGTTGGTGCATGGGGGAGCACATGCAAAACC
AAACTTGTAAAATCAAAGATTGCGATCGTAAGTTTTACTACTTTTGTATC
gcccaaaatttgaaaacctgAATAAATTTCGTATTTCCATTTCCATTTGC
TAAAAATATCTATATTTTGTACACCAACAAAAAGAGCTGACTTTTCTTGC
TATATATACAACACCTCTTGTCCTCAATCATTCGATCGATATATTGTTAA
CTATTTTACCATAGGTAATGGAGAATGGTCTGCTTGGACTGAATGGGGAC
CATGCGACAAATCTTGTGGCGGTGGAAACAAGACACGCTACCGAGAGTGC
CACAACCCACCACCCATGGGAAACGGTCTACAATGTCTGTTGAATGGAAG
CTCCACTGAACGAAGTATGATCGATATGGATGTACAAACGTGCAATGACA
TCATCTGTGACCGTAAGTTagtttcatgaaaaagtttttttaatctACCA
GTCAAAAATCCTCAATCGATGATAGTTGCTTACTCAAATACTTCAAAGAt
catatttgaaaagaaaagagaaactAAAAACATATTTGCATGTAGATTTC
CATCAACTAAATTGATATCTTGGTTGACATATTACTTTGCTATTGTGACT
ATTTGTTGGTGACGGTTTTAGGTGATGGTGGTTGGAATGCATGGGCCGTT
GCTGTTGAATGCTCTGTAGAATGTGGTAATGGAACTAAAGTTTCCCTTAG
AAACTGCACCAACCCTGTCCCTCTTGGAGGAGGTAAACAATGCCCTATGG
AAAAGAAATTATACAATCTGACCATGTATGCTTTACAAGATAGAAGAGAG
GAACCATGTTATGCTGGAGAATGTCTTACA

Coding sequence (CDS) from alignment at sc0004167:4128..5407+

>TCONS_00043372 ID=TCONS_00043372|Name=TCONS_00043372|organism=Clytia hemisphaerica|type=CDS|length=2700bp|location=Sequence derived from alignment at sc0004167:4128..5407+ (Clytia hemisphaerica)
TTTATTGGTCAAAGAAATGATGATAACGTGTATTCTTTTGAGAGTGATAT
TGCTATTGACAACATCAACTTGAATGAAGGAAACTGTTCTGGGCCAATTG
ACGGACGTTACACTGAATGGTCATCTTGGGGTATGTGTGACCAAGCCTGT
GGAATGGGCAAACAAAATAGGACGAGATATTGCACAAACCCTGCACCAAT
GAACGGTGGCAGTTGGTGCATGGGGGAGCACATGCAAAACCAAACTTGTA
AAATCAAAGATTGCGATCGTAATGGAGAATGGTCTGCTTGGACTGAATGG
GGACCATGCGACAAATCTTGTGGCGGTGGAAACAAGACACGCTACCGAGA
GTGCCACAACCCACCACCCATGGGAAACGGTCTACAATGTCTGTTGAATG
GAAGCTCCACTGAACGAAGTATGATCGATATGGATGTACAAACGTGCAAT
GACATCATCTGTGACCGTGATGGTGGTTGGAATGCATGGGCCGTTGCTGT
TGAATGCTCTGTAGAATGTGGTAATGGAACTAAAGTTTCCCTTAGAAACT
GCACCAACCCTGTCCCTCTTGGAGGAGGTAAACAATGCCCTATGGAAAAG
AAATTATACAATCTGACCATGTATGCTTTACAAGATAGAAGAGAGGAACC
ATGTTATGCTGGAGAATGTCTTACATTTATTGGTCAAAGAAATGATGATA
ACGTGTATTCTTTTGAGAGTGATATTGCTATTGACAACATCAACTTGAAT
GAAGGAAACTGTTCTGGGCCAATTGACGGACGTTACACTGAATGGTCATC
TTGGGGTATGTGTGACCAAGCCTGTGGAATGGGCAAACAAAATAGGACGA
GATATTGCACAAACCCTGCACCAATGAACGGTGGCAGTTGGTGCATGGGG
GAGCACATGCAAAACCAAACTTGTAAAATCAAAGATTGCGATCGTAATGG
AGAATGGTCTGCTTGGACTGAATGGGGACCATGCGACAAATCTTGTGGCG
GTGGAAACAAGACACGCTACCGAGAGTGCCACAACCCACCACCCATGGGA
AACGGTCTACAATGTCTGTTGAATGGAAGCTCCACTGAACGAAGTATGAT
CGATATGGATGTACAAACGTGCAATGACATCATCTGTGACCGTGATGGTG
GTTGGAATGCATGGGCCGTTGCTGTTGAATGCTCTGTAGAATGTGGTAAT
GGAACTAAAGTTTCCCTTAGAAACTGCACCAACCCTGTCCCTCTTGGAGG
AGGTAAACAATGCCCTATGGAAAAGAAATTATACAATCTGACCATGTATG
CTTTACAAGATAGAAGAGAGGAACCATGTTATGCTGGAGAATGTCTTACA
TTTATTGGTCAAAGAAATGATGATAACGTGTATTCTTTTGAGAGTGATAT
TGCTATTGACAACATCAACTTGAATGAAGGAAACTGTTCTGGGCCAATTG
ACGGACGTTACACTGAATGGTCATCTTGGGGTATGTGTGACCAAGCCTGT
GGAATGGGCAAACAAAATAGGACGAGATATTGCACAAACCCTGCACCAAT
GAACGGTGGCAGTTGGTGCATGGGGGAGCACATGCAAAACCAAACTTGTA
AAATCAAAGATTGCGATCGTAATGGAGAATGGTCTGCTTGGACTGAATGG
GGACCATGCGACAAATCTTGTGGCGGTGGAAACAAGACACGCTACCGAGA
GTGCCACAACCCACCACCCATGGGAAACGGTCTACAATGTCTGTTGAATG
GAAGCTCCACTGAACGAAGTATGATCGATATGGATGTACAAACGTGCAAT
GACATCATCTGTGACCGTGATGGTGGTTGGAATGCATGGGCCGTTGCTGT
TGAATGCTCTGTAGAATGTGGTAATGGAACTAAAGTTTCCCTTAGAAACT
GCACCAACCCTGTCCCTCTTGGAGGAGGTAAACAATGCCCTATGGAAAAG
AAATTATACAATCTGACCATGTATGCTTTACAAGATAGAAGAGAGGAACC
ATGTTATGCTGGAGAATGTCTTACATTTATTGGTCAAAGAAATGATGATA
ACGTGTATTCTTTTGAGAGTGATATTGCTATTGACAACATCAACTTGAAT
GAAGGAAACTGTTCTGGGCCAATTGACGGACGTTACACTGAATGGTCATC
TTGGGGTATGTGTGACCAAGCCTGTGGAATGGGCAAACAAAATAGGACGA
GATATTGCACAAACCCTGCACCAATGAACGGTGGCAGTTGGTGCATGGGG
GAGCACATGCAAAACCAAACTTGTAAAATCAAAGATTGCGATCGTAATGG
AGAATGGTCTGCTTGGACTGAATGGGGACCATGCGACAAATCTTGTGGCG
GTGGAAACAAGACACGCTACCGAGAGTGCCACAACCCACCACCCATGGGA
AACGGTCTACAATGTCTGTTGAATGGAAGCTCCACTGAACGAAGTATGAT
CGATATGGATGTACAAACGTGCAATGACATCATCTGTGACCGTGATGGTG
GTTGGAATGCATGGGCCGTTGCTGTTGAATGCTCTGTAGAATGTGGTAAT
GGAACTAAAGTTTCCCTTAGAAACTGCACCAACCCTGTCCCTCTTGGAGG
AGGTAAACAATGCCCTATGGAAAAGAAATTATACAATCTGACCATGTATG
CTTTACAAGATAGAAGAGAGGAACCATGTTATGCTGGAGAATGTCTTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027077XLOC_027077Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043372-exon-sc0004167-1491911889:4128..4225TCONS_00043372-exon-sc0004167-1491911889:4128..4225Clytia hemisphaericaexon
TCONS_00043372-exon-sc0004167-1510915933:4128..4225TCONS_00043372-exon-sc0004167-1510915933:4128..4225Clytia hemisphaericaexon
TCONS_00043372-exon-sc0004167-1575043694:4128..4225TCONS_00043372-exon-sc0004167-1575043694:4128..4225Clytia hemisphaericaexon
TCONS_00043372-exon-sc0004167-1491911889:4434..4604TCONS_00043372-exon-sc0004167-1491911889:4434..4604Clytia hemisphaericaexon
TCONS_00043372-exon-sc0004167-1510915933:4434..4604TCONS_00043372-exon-sc0004167-1510915933:4434..4604Clytia hemisphaericaexon
TCONS_00043372-exon-sc0004167-1575043694:4434..4604TCONS_00043372-exon-sc0004167-1575043694:4434..4604Clytia hemisphaericaexon
TCONS_00043372-exon-sc0004167-1491911889:4792..4989TCONS_00043372-exon-sc0004167-1491911889:4792..4989Clytia hemisphaericaexon
TCONS_00043372-exon-sc0004167-1510915933:4792..4989TCONS_00043372-exon-sc0004167-1510915933:4792..4989Clytia hemisphaericaexon
TCONS_00043372-exon-sc0004167-1575043694:4792..4989TCONS_00043372-exon-sc0004167-1575043694:4792..4989Clytia hemisphaericaexon
TCONS_00043372-exon-sc0004167-1491911889:5199..5407TCONS_00043372-exon-sc0004167-1491911889:5199..5407Clytia hemisphaericaexon
TCONS_00043372-exon-sc0004167-1510915933:5199..5407TCONS_00043372-exon-sc0004167-1510915933:5199..5407Clytia hemisphaericaexon
TCONS_00043372-exon-sc0004167-1575043694:5199..5407TCONS_00043372-exon-sc0004167-1575043694:5199..5407Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043372-proteinTCONS_00043372-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004167supercontigsc0004167:4128..5407 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0815756	0.155015	0	0.176241	0.5659	0.625292	0.782636	1.31186	0.205686	1.29704	1.37584	0.325065	111.313	108.856	0.366425	0.663841	0.29688	0.424169	184.861	366.216	0.310581	0.816812	0	0.0807936	0.365738	0.957088	0.111157	0.118283	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
Blast
[Close]
BLAST of TCONS_00043372 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 7.405e-37
Identity = 71/165 (43.03%), Postives = 95/165 (57.58%), Query Frame = 2 
Query:   95 PIDGRYTEWSSWGMCDQACGMGKQNRTRYCTNPAPMNGGSWCMGEHMQNQTCKIKDCDRNGEWSAWTEWGPCDKSCGGGNKTRYRECHNPPPMGNGLQCLLNGSSTERSMIDMDVQTCNDIICDRDGGWNAWAVAVECSVECGNGTKVSLRNCTNPVPLGGGKQC 589
            P+DG ++EWS W  C ++CG G Q RTR C NP+  +GG  C G  ++   C I+ C  +G WSAW  WG C +SCG G +TR R C+NPPP   G  C  +G+ T+       +Q CN+  C   G W  WA    CSV CG G +   R C++PVP  GG++C
Sbjct: 4584 PVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYC--DGAETQ-------MQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKC 4739

HSP 2 Score: 139.813 bits (351), Expect = 9.657e-37
Identity = 72/173 (41.62%), Postives = 92/173 (53.18%), Query Frame = 2 
Query:   74 NEGNCSGPIDGRYTEWSSWGMCDQACGMGKQNRTRYCTNPAPMNGGSWCMGEHMQNQTCKIKDCDRNGEWSAWTEWGPCDKSCGGGNKTRYRECHNPPPMGNGLQCLLNGSSTERSMIDMDVQTCNDIICDRDGGWNAWAVAVECSVECGNGTKVSLRNCTNPVPLGGGKQCP 592
            NE NC  PI G++  W+SW  C  +CG G + RTR C++P P  GG  C G  +Q+  C    C  +G WS W+ WG C ++C GG   RYR C NPPP   G  C   G        D  +Q CN  +C  DG W +W    +CS  CG G K   R C +PVP+ GG+ CP
Sbjct: 4693 NERNC--PIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRAC--GGP-------DSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCP 4854

HSP 3 Score: 121.709 bits (304), Expect = 1.244e-30
Identity = 65/164 (39.63%), Postives = 84/164 (51.22%), Query Frame = 2 
Query:   98 IDGRYTEWSSWGMCDQACGMGKQNRTRYCTNPAPMNGGSWCMGEHMQNQTCKIKDCDRNGEWSAWTEWGPCDKSCGGGNKTRYRECHNPPPMGNGLQCLLNGSSTERSMIDMDVQTCNDIICDRDGGWNAWAVAVECSVECGNGTKVSLRNCTNPVPLGGGKQC 589
            + G +++WS+W  C   CG G Q R+R C  P P NGG  C G  ++ + C+ K C  +G WS W+ W  C +SCG GN+TR R C+NP     G  C   G++ E  M       CN   C   G W+AW     CS  CG GT+   R C NP P  GG  C
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPC--EGNAVEIIM-------CNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYC 4682
The following BLAST results are available for this feature:
BLAST of TCONS_00043372 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN17.405e-3743.03Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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