TCONS_00043410 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043410
Unique NameTCONS_00043410
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length559

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043410 ID=TCONS_00043410|Name=TCONS_00043410|organism=Clytia hemisphaerica|type=transcript|length=559bp
CCATCTTGGGGGAATcaccaaaaatgtaaacaaacgttTGGCTAGAGAAT
TGAGATAATGACATGTAATTGTGTTGATTAGAAAAAGGGGTTAGAAACTC
ACAAGGAAAGggatttgtttttaatttaaatgTACTAAACACTAAGTCCT
AGGAATATTTGATTCTAAAATTTGTTTTAGTAGAAGTCGGTTTTCATATA
TGCCAGTTTGAAAGTAAGTGATTAAGTTCATTTTGTTTGTCAGTTGTTAG
TGTAGAGGATGTTTTTAGCTTGTTGTGTTTGTTTTTGGTGATTAGGATAT
CCATGATGTCAACGTTATTCTGTGTACATGTATCAAAGATATTCTGTAAA
ATTGATACTGAGCGCAGGTCGTAGGGTGTATTTAGTAGAGTCAGAAGGTA
TTTTGACGTTGAAGGGTTTCTCATAAGTTGCTGTACCAAGTTGATTTGGC
GGTTGGTAATTTCATTTGAGATCGAGTCTAGGTTGAAGTATTTGATTAGA
TCATTGCTACTATGTTTCGATAGGTTGAGGAGATGCTTTAGTGCTGAGCG
ACACTGTCT
Run BLAST on NCBI

protein sequence of TCONS_00043410-protein

>TCONS_00043410-protein ID=TCONS_00043410-protein|Name=TCONS_00043410-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
RQCRSALKHLLNLSKHSSNDLIKYFNLDSISNEITNRQINLVQQLMRNPS
TSKYLLTLLNTPYDLRSVSILQNIFDTCTQNNVDIMDILITKNKHNKLKT
SSTLTTDKQNELNHLLSNWHI
Run BLAST on NCBI

transcript from alignment at sc0004204:2934..3492

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043410 ID=TCONS_00043410|Name=TCONS_00043410|organism=Clytia hemisphaerica|type=transcript|length=559bp|location=Sequence derived from alignment at sc0004204:2934..3492 (Clytia hemisphaerica)
AGACAGTGTCGCTCAGCACTAAAGCATCTCCTCAACCTATCGAAACATAG
TAGCAATGATCTAATCAAATACTTCAACCTAGACTCGATCTCAAATGAAA
TTACCAACCGCCAAATCAACTTGGTACAGCAACTTATGAGAAACCCTTCA
ACGTCAAAATACCTTCTGACTCTACTAAATACACCCTACGACCTGCGCTC
AGTATCAATTTTACAGAATATCTTTGATACATGTACACAGAATAACGTTG
ACATCATGGATATCCTAATCACCAAAAACAAACACAACAAGCTAAAAACA
TCCTCTACACTAACAACTGACAAACAAAATGAACTTAATCACTTACTTTC
AAACTGGCATATATGAAAACCGACTTCTACTAAAACAAATTTTAGAATCA
AATATTCCTAGGACTTAGTGTTTAGTAcatttaaattaaaaacaaatccC
TTTCCTTGTGAGTTTCTAACCCCTTTTTCTAATCAACACAATTACATGTC
ATTATCTCAATTCTCTAGCCAaacgtttgtttacatttttggtgATTCCC
CCAAGATGG

Coding sequence (CDS) from alignment at sc0004204:2934..3492

>TCONS_00043410 ID=TCONS_00043410|Name=TCONS_00043410|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at sc0004204:2934..3492 (Clytia hemisphaerica)
AGACAGTGTCGCTCAGCACTAAAGCATCTCCTCAACCTATCGAAACATAG
TAGCAATGATCTAATCAAATACTTCAACCTAGACTCGATCTCAAATGAAA
TTACCAACCGCCAAATCAACTTGGTACAGCAACTTATGAGAAACCCTTCA
ACGTCAAAATACCTTCTGACTCTACTAAATACACCCTACGACCTGCGCTC
AGTATCAATTTTACAGAATATCTTTGATACATGTACACAGAATAACGTTG
ACATCATGGATATCCTAATCACCAAAAACAAACACAACAAGCTAAAAACA
TCCTCTACACTAACAACTGACAAACAAAATGAACTTAATCACTTACTTTC
AAACTGGCATATATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027110XLOC_027110Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043410-exon-sc0004204-1491911889:2934..3492TCONS_00043410-exon-sc0004204-1491911889:2934..3492Clytia hemisphaericaexon
TCONS_00043410-exon-sc0004204-1510915933:2934..3492TCONS_00043410-exon-sc0004204-1510915933:2934..3492Clytia hemisphaericaexon
TCONS_00043410-exon-sc0004204-1575043694:2934..3492TCONS_00043410-exon-sc0004204-1575043694:2934..3492Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043410-proteinTCONS_00043410-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004204supercontigsc0004204:2934..3492 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.403098	1.19119	0.735471	0.508657	0.79249	1.34693	0.912245	1.53216	0.316364	0	0.783622	0.783284	0.517126	0.876745	0.304048	0.800709	0.563662	0.589174	0	0.208807	1.14139	0	0.293372	0.579179	0.395765	0.929554	1.12062	0.169172	0.175483	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043410 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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