TCONS_00043530 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043530
Unique NameTCONS_00043530
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length272

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043530 ID=TCONS_00043530|Name=TCONS_00043530|organism=Clytia hemisphaerica|type=transcript|length=272bp
NNCAGACGACTCATCAAACGGAAATCCATCTAAGAATGAACAATTCAAAC
CAGTTATAGAGTTAATTAAATCAGAACTAGACAAAACTGAAGGAAAAACA
CCAGGCATCTTCATAGCAGGTGATTTTAACCTGCCACACGCAAATTGGGA
CAGCAAGTGCTCAAATCCTGGGGCATCTACAGAGGAACAAAGAATGACTA
GTGAAATATTCACTCTTATGAATGACCATAATCTGATTCAACACATTAGA
GGAGCCACACACAAAGCAGGNN
Run BLAST on NCBI

transcript from alignment at sc0004325:3002..3273

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043530 ID=TCONS_00043530|Name=TCONS_00043530|organism=Clytia hemisphaerica|type=transcript|length=272bp|location=Sequence derived from alignment at sc0004325:3002..3273 (Clytia hemisphaerica)
NNCCTGCTTTGTGTGTGGCTCCTCTAATGTGTTGAATCAGATTATGGTCA
TTCATAAGAGTGAATATTTCACTAGTCATTCTTTGTTCCTCTGTAGATGC
CCCAGGATTTGAGCACTTGCTGTCCCAATTTGCGTGTGGCAGGTTAAAAT
CACCTGCTATGAAGATGCCTGGTGTTTTTCCTTCAGTTTTGTCTAGTTCT
GATTTAATTAACTCTATAACTGGTTTGAATTGTTCATTCTTAGATGGATT
TCCGTTTGATGAGTCGTCTGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027218XLOC_027218Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043530-exon-sc0004325-1491911889:3002..3273TCONS_00043530-exon-sc0004325-1491911889:3002..3273Clytia hemisphaericaexon
TCONS_00043530-exon-sc0004325-1510915933:3002..3273TCONS_00043530-exon-sc0004325-1510915933:3002..3273Clytia hemisphaericaexon
TCONS_00043530-exon-sc0004325-1575043694:3002..3273TCONS_00043530-exon-sc0004325-1575043694:3002..3273Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004325supercontigsc0004325:3002..3273 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.24507	8.47218	17.2326	7.37566	12.2034	14.7231	15.5711	17.4107	7.47769	10.4574	14.1115	6.71796	8.58625	13.5811	3.82036	3.28436	7.93245	3.1341	1.79209	2.99676	8.89217	7.00515	0	4.02889	13.061	11.63	4.35883	3.79394	5.44848	5.08705
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043530 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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