TCONS_00043540 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043540
Unique NameTCONS_00043540
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length603

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043540 ID=TCONS_00043540|Name=TCONS_00043540|organism=Clytia hemisphaerica|type=transcript|length=603bp
ATGTTCAAACGATAGAACATCATGGTTAAACAACAGAACATCATGTTGAG
GCGGTGGGGCGTTATGTTGAAGCGAAGCGACACCATGTTGAGACAACAAA
AGGTTATGATGAGATGATGAGACGCTATCTTGAGGTGGGGGTTCATAATG
GAATGCTTGTTCATGAGGGTCATGTCCTAAATTGGAGGCTTGCCTGAGTA
ACCGAGCATCCATCTTTGAATCCTCTGACTCTGAAGATTGATCATCCATC
GGAAGATTTTGAAAGATCAAATTGTATTGTGAGTTTGCGTTAAGTTCGGA
ATTTGAAGTGGTACGATTCCCCGTGACGTTGTAACAGACGTCCGATTCGC
TATGTGGAGCGACTATAGGTTGTTCGATTTGGGCGGTAGTATCAGGGGAT
GAATAACTGTCACTTACATGATCATTGATAAGTTGTGTCTTTTCACGTAC
CTGCCCGGTATGATGGAGTAATCTGTAATCAATTCTCTTGCGTGATCTCT
TGCTGTTTGAATGTTGCATGGAGTTCACCACTGAGGATTCTCGTACTGAC
GTATATTTGTAATCAAGGATTCAAACTAAATAGATACAAAGATCCAAAAT
TAG
Run BLAST on NCBI

protein sequence of TCONS_00043540-protein

>TCONS_00043540-protein ID=TCONS_00043540-protein|Name=TCONS_00043540-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
MQHSNSKRSRKRIDYRLLHHTGQVREKTQLINDHVSDSYSSPDTTAQIEQ
PIVAPHSESDVCYNVTGNRTTSNSELNANSQYNLIFQNLPMDDQSSESED
SKMDARLLRQASNLGHDPHEQAFHYEPPPQDSVSSSHHNLLLSQHGVASL
QHNAPPPQHDVLLFNHDVLSFEH
Run BLAST on NCBI

transcript from alignment at sc0004333:2102..2704

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043540 ID=TCONS_00043540|Name=TCONS_00043540|organism=Clytia hemisphaerica|type=transcript|length=603bp|location=Sequence derived from alignment at sc0004333:2102..2704 (Clytia hemisphaerica)
CTAATTTTGGATCTTTGTATCTATTTAGTTTGAATCCTTGATTACAAATA
TACGTCAGTACGAGAATCCTCAGTGGTGAACTCCATGCAACATTCAAACA
GCAAGAGATCACGCAAGAGAATTGATTACAGATTACTCCATCATACCGGG
CAGGTACGTGAAAAGACACAACTTATCAATGATCATGTAAGTGACAGTTA
TTCATCCCCTGATACTACCGCCCAAATCGAACAACCTATAGTCGCTCCAC
ATAGCGAATCGGACGTCTGTTACAACGTCACGGGGAATCGTACCACTTCA
AATTCCGAACTTAACGCAAACTCACAATACAATTTGATCTTTCAAAATCT
TCCGATGGATGATCAATCTTCAGAGTCAGAGGATTCAAAGATGGATGCTC
GGTTACTCAGGCAAGCCTCCAATTTAGGACATGACCCTCATGAACAAGCA
TTCCATTATGAACCCCCACCTCAAGATAGCGTCTCATCATCTCATCATAA
CCTTTTGTTGTCTCAACATGGTGTCGCTTCGCTTCAACATAACGCCCCAC
CGCCTCAACATGATGTTCTGTTGTTTAACCATGATGTTCTATCGTTTGAA
CAT

Coding sequence (CDS) from alignment at sc0004333:2102..2704

>TCONS_00043540 ID=TCONS_00043540|Name=TCONS_00043540|organism=Clytia hemisphaerica|type=CDS|length=519bp|location=Sequence derived from alignment at sc0004333:2102..2704 (Clytia hemisphaerica)
ATGCAACATTCAAACAGCAAGAGATCACGCAAGAGAATTGATTACAGATT
ACTCCATCATACCGGGCAGGTACGTGAAAAGACACAACTTATCAATGATC
ATGTAAGTGACAGTTATTCATCCCCTGATACTACCGCCCAAATCGAACAA
CCTATAGTCGCTCCACATAGCGAATCGGACGTCTGTTACAACGTCACGGG
GAATCGTACCACTTCAAATTCCGAACTTAACGCAAACTCACAATACAATT
TGATCTTTCAAAATCTTCCGATGGATGATCAATCTTCAGAGTCAGAGGAT
TCAAAGATGGATGCTCGGTTACTCAGGCAAGCCTCCAATTTAGGACATGA
CCCTCATGAACAAGCATTCCATTATGAACCCCCACCTCAAGATAGCGTCT
CATCATCTCATCATAACCTTTTGTTGTCTCAACATGGTGTCGCTTCGCTT
CAACATAACGCCCCACCGCCTCAACATGATGTTCTGTTGTTTAACCATGA
TGTTCTATCGTTTGAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027228XLOC_027228Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043540-exon-sc0004333-1491911889:2102..2704TCONS_00043540-exon-sc0004333-1491911889:2102..2704Clytia hemisphaericaexon
TCONS_00043540-exon-sc0004333-1510915933:2102..2704TCONS_00043540-exon-sc0004333-1510915933:2102..2704Clytia hemisphaericaexon
TCONS_00043540-exon-sc0004333-1575043694:2102..2704TCONS_00043540-exon-sc0004333-1575043694:2102..2704Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043540-proteinTCONS_00043540-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004333supercontigsc0004333:2102..2704 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.55875	1.04996	2.47446	1.3401	1.11201	0.620363	0.81037	0.324612	0.379396	0.721004	0.547366	1.20696	1.9723	1.01132	1.12568	0.900391	0.323901	0.847942	1.51144	1.75154	0.376388	0.622852	0.288203	0.964153	2.41693	1.92374	0.82832	0.811458	0.96316	0.609054
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043540 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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