TCONS_00043575 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043575
Unique NameTCONS_00043575
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length542

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043575 ID=TCONS_00043575|Name=TCONS_00043575|organism=Clytia hemisphaerica|type=transcript|length=542bp
GCGTTAAAAAACAGCTGGGGGTTTGGGGGCGTTATTTCCAGTTTACAAGC
CCAATTATTGCTTAGAATTGTAatcttttttgacaaaaatagtccttttc
aattttgaattcgCTTTAGGGGAGACATGACCGATACTTCTGTctacttt
ttctgatttttggactttgtgagtTAATTTGAGctacagtttttttataa
gttttgaagctattttctGAGTCATGAGtgtgttttgagatttttctgaa
ataccgccgctgatgggattcgaaTCCACTATAACAATGTTAAACTAACT
CCTTTAAGCACATATTGATGACATCAGCAAAATTACGCACTTGGGCATAT
CTCTCCTGGACATTTCCCAGAAATTATGccagacctcaaacactgacacA
TTATGCGGAATTACTTTTACTTTAGCGTGTAATCaagttgttttggagaa
tgtCTTTTGAATAACTCAGACAATTACTCcagcagaattttttttaatga
taatgCAGGATAATGTTATCTTATTGATTTGCAGTTGAGGGG
Run BLAST on NCBI

transcript from alignment at sc0004357:1959..2500

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043575 ID=TCONS_00043575|Name=TCONS_00043575|organism=Clytia hemisphaerica|type=transcript|length=542bp|location=Sequence derived from alignment at sc0004357:1959..2500 (Clytia hemisphaerica)
CCCCTCAACTGCAAATCAATAAGATAACATTATCCTGcattatcattaaa
aaaaattctgctgGAGTAATTGTCTGAGTTATTCAAAAGacattctccaa
aacaacttGATTACACGCTAAAGTAAAAGTAATTCCGCATAATgtgtcag
tgtttgaggtctggCATAATTTCTGGGAAATGTCCAGGAGAGATATGCCC
AAGTGCGTAATTTTGCTGATGTCATCAATATGTGCTTAAAGGAGTTAGTT
TAACATTGTTATAGTGGAttcgaatcccatcagcggcggtatttcagaaa
aatctcaaaacacaCTCATGACTCagaaaatagcttcaaaacttataaaa
aaactgtagCTCAAATTAactcacaaagtccaaaaatcagaaaaagtagA
CAGAAGTATCGGTCATGTCTCCCCTAAAGcgaattcaaaattgaaaagga
ctatttttgtcaaaaaagatTACAATTCTAAGCAATAATTGGGCTTGTAA
ACTGGAAATAACGCCCCCAAACCCCCAGCTGTTTTTTAACGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027262XLOC_027262Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043575-exon-sc0004357-1491911889:1959..2500TCONS_00043575-exon-sc0004357-1491911889:1959..2500Clytia hemisphaericaexon
TCONS_00043575-exon-sc0004357-1510915933:1959..2500TCONS_00043575-exon-sc0004357-1510915933:1959..2500Clytia hemisphaericaexon
TCONS_00043575-exon-sc0004357-1575043694:1959..2500TCONS_00043575-exon-sc0004357-1575043694:1959..2500Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004357supercontigsc0004357:1959..2500 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.319619	0	0.24126	0.708104	0.431025	0.454135	0.547895	0.128233	0	0.333617	0	0.14191	0.991988	1.03019	0.0604968	0	0.079979	0.163952	0.679525	0.355537	0	0.301464	0.122156	0.222116	0.686322	0.816702	0.730436	0.311816	0.827756	0.722873
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043575 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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