TCONS_00043588 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043588
Unique NameTCONS_00043588
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length854

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043588 ID=TCONS_00043588|Name=TCONS_00043588|organism=Clytia hemisphaerica|type=transcript|length=854bp
accaatcgttcTAAAAGTTAAATTAGAGCCGTTGATGGtaatatttcttt
atgagaGATGCTTTGttggatttaaaatttttgagtaAACTATGCTTTGC
ATGCTTTCTAACTAAATCCAACCATGGCTTTTTTGTCtctgtatttttgc
atattaTATAAATTTGTTTGCCACCCATCAGCATCatattttctgctgat
tttcaactgcacggttatcaaaatgacagaatttttaagcgtgtaattTA
TACATGCTTATCGAAGaagaaattgttctgaaacgggcggtaagcgtGTA
ATTGCACCCTTTATTATTCtgacacgcaattccttccgaaagctctgttg
aatTTCAAAAGCCTAAGGCAGTTTTACTCAAAATTTATCGTAGAAGAAGA
TTCCGTAAAAATGGATTGCCCGTTAAACCATGCCTTCGCCCAaattagag
aattctgaaccccttgaaatccctaagcaatttcaaccggggcgggagcg
agcgcaaattataaccatgcaattgcgcgcttacgccctcggaacataag
cgtgcaattgagaggatttcccagacttgCCTACCTGCCGCCACCAAAAT
ATTTGGGCCTTGCCAATGATTGTTGCAGTAAGAAAGCCTTAAATATGACA
CAGCCCTCTTGCCTTGCCTTGAGCCCTGTCCTATCTATCTTGGGTCGATC
GATATAAGTTCAGTATCATTGTTTGTCatgcaaaaaaggttttttaaatt
GTGAATTCTGTTATTATTAAAACTCATCATCATAGTTTTGGATGAGCAGA
TGAGAGGATTATTTGCATACTGGATATAAAAGGAAGGACAGCTGACATGA
AAAT
Run BLAST on NCBI

transcript from alignment at sc0004369:6317..7170

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043588 ID=TCONS_00043588|Name=TCONS_00043588|organism=Clytia hemisphaerica|type=transcript|length=854bp|location=Sequence derived from alignment at sc0004369:6317..7170 (Clytia hemisphaerica)
ATTTTCATGTCAGCTGTCCTTCCTTTTATATCCAGTATGCAAATAATCCT
CTCATCTGCTCATCCAAAACTATGATGATGAGTTTTAATAATAACAGAAT
TCACaatttaaaaaaccttttttgcatGACAAACAATGATACTGAACTTA
TATCGATCGACCCAAGATAGATAGGACAGGGCTCAAGGCAAGGCAAGAGG
GCTGTGTCATATTTAAGGCTTTCTTACTGCAACAATCATTGGCAAGGCCC
AAATATTTTGGTGGCGGCAGGTAGGcaagtctgggaaatcctctcaattg
cacgcttatgttccgagggcgtaagcgcgcaattgcatggttataatttg
cgctcgctcccgccccggttgaaattgcttagggatttcaaggggttcag
aattctctaattTGGGCGAAGGCATGGTTTAACGGGCAATCCATTTTTAC
GGAATCTTCTTCTACGATAAATTTTGAGTAAAACTGCCTTAGGCTTTTGA
AattcaacagagctttcggaaggaattgcgtgtcaGAATAATAAAGGGTG
CAATTACacgcttaccgcccgtttcagaacaatttcttCTTCGATAAGCA
TGTATAaattacacgcttaaaaattctgtcattttgataaccgtgcagtt
gaaaatcagcagaaaatatGATGCTGATGGGTGGCAAACAAATTTATAta
atatgcaaaaatacagaGACAAAAAAGCCATGGTTGGATTTAGTTAGAAA
GCATGCAAAGCATAGTTtactcaaaaattttaaatccaaCAAAGCATCtc
tcataaagaaatattaCCATCAACGGCTCTAATTTAACTTTTAgaacgat
tggt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027275XLOC_027275Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043588-exon-sc0004369-1491911889:6317..7170TCONS_00043588-exon-sc0004369-1491911889:6317..7170Clytia hemisphaericaexon
TCONS_00043588-exon-sc0004369-1510915933:6317..7170TCONS_00043588-exon-sc0004369-1510915933:6317..7170Clytia hemisphaericaexon
TCONS_00043588-exon-sc0004369-1575043694:6317..7170TCONS_00043588-exon-sc0004369-1575043694:6317..7170Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004369supercontigsc0004369:6317..7170 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.19673	1.12581	3.32626	2.30495	1.8462	1.52987	3.40716	2.61868	0.957857	1.57323	2.71224	3.13206	2.39276	1.40825	0.744476	1.46918	1.63627	1.30478	0.698909	1.5601	1.8748	3.77697	0.410106	0.34183	2.70512	3.21437	0.90423	2.05798	1.47985	1.10076
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043588 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top