TCONS_00043634 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043634
Unique NameTCONS_00043634
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length684

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043634 ID=TCONS_00043634|Name=TCONS_00043634|organism=Clytia hemisphaerica|type=transcript|length=684bp
GTGAAGGTCAATTTATTACAGTCCTCGTGATCAGTAACCGTATTATCAGT
TTGTTCGTAATTACCTGACGCCTCAAAGATATTGTTGTTGTCAGCTGTGG
CGTCAACAGTCTCGTCGGTTGGATGGTCGTCACGGAGCAACCCTGTCGCT
GTACTTGANCCTCAAAGATATTGTTGTTGTCAACAGTCTCGTCGGTTGGA
TGGTCGTCACGGAGCAACCCTGTCGCTGTACTTGAGTCGTCAACACTGTC
AGGATTTGTCACTTTGTCCAGTTGGATAGCGTCATTTGTATTTATGTCAT
CAGTATTTGTTGTTAAgtcatttgttttgttttggtcaTCAGTAATCATC
GTAACGTCAAAATCATCAGTATCTATTGTATTTGTGTCCTGGTTTTCCGC
AATTGTCAAAGTCGAATCGTCTCGGTCAACTGGTTTTACTGTCAAGTCGC
AGTCGTCATAAGTTGTCAAGGTGCAGTCGTCAGAAGTTGTTTTGTCAGCT
GGTTTGAATGTGGCGGAGGATGTGTTCTTCACAAAATCTGGTCGTTTCTC
TGTGCACACCACTGAAAACCCAGAAGACTTTGGTTTTGCCGCAGGTAAGC
ccaaattaacttttttgaaaacgaaagagtTGACATTGGCCATCTTCTCT
GTTGAAATAATGTCTGTTTGTGGCTATGaaggaa
Run BLAST on NCBI

protein sequence of TCONS_00043634-protein

>TCONS_00043634-protein ID=TCONS_00043634-protein|Name=TCONS_00043634-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
MANVNSFVFKKVNLGLPAAKPKSSGFSVVCTEKRPDFVKNTSSATFKPAD
KTTSDDCTLTTYDDCDLTVKPVDRDDSTLTIAENQDTNTIDTDDFDVTMI
TDDQNKTNDLTTNTDDINTNDAIQLDKVTNPDSVDDSSTATGLLRDDHPT
DETVDNNNIFEXQVQRQGCSVTTIQPTRLLTPQLTTTISLRRQVITNKLI
IRLLITRTVIN
Run BLAST on NCBI

transcript from alignment at sc0004415:3761..4444

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043634 ID=TCONS_00043634|Name=TCONS_00043634|organism=Clytia hemisphaerica|type=transcript|length=684bp|location=Sequence derived from alignment at sc0004415:3761..4444 (Clytia hemisphaerica)
ttccttCATAGCCACAAACAGACATTATTTCAACAGAGAAGATGGCCAAT
GTCAactctttcgttttcaaaaaagttaatttggGCTTACCTGCGGCAAA
ACCAAAGTCTTCTGGGTTTTCAGTGGTGTGCACAGAGAAACGACCAGATT
TTGTGAAGAACACATCCTCCGCCACATTCAAACCAGCTGACAAAACAACT
TCTGACGACTGCACCTTGACAACTTATGACGACTGCGACTTGACAGTAAA
ACCAGTTGACCGAGACGATTCGACTTTGACAATTGCGGAAAACCAGGACA
CAAATACAATAGATACTGATGATTTTGACGTTACGATGATTACTGAtgac
caaaacaaaacaaatgacTTAACAACAAATACTGATGACATAAATACAAA
TGACGCTATCCAACTGGACAAAGTGACAAATCCTGACAGTGTTGACGACT
CAAGTACAGCGACAGGGTTGCTCCGTGACGACCATCCAACCGACGAGACT
GTTGACAACAACAATATCTTTGAGGNTCAAGTACAGCGACAGGGTTGCTC
CGTGACGACCATCCAACCGACGAGACTGTTGACGCCACAGCTGACAACAA
CAATATCTTTGAGGCGTCAGGTAATTACGAACAAACTGATAATACGGTTA
CTGATCACGAGGACTGTAATAAATTGACCTTCAC

Coding sequence (CDS) from alignment at sc0004415:3761..4444

>TCONS_00043634 ID=TCONS_00043634|Name=TCONS_00043634|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at sc0004415:3761..4444 (Clytia hemisphaerica)
ATGGCCAATGTCAactctttcgttttcaaaaaagttaatttggGCTTACC
TGCGGCAAAACCAAAGTCTTCTGGGTTTTCAGTGGTGTGCACAGAGAAAC
GACCAGATTTTGTGAAGAACACATCCTCCGCCACATTCAAACCAGCTGAC
AAAACAACTTCTGACGACTGCACCTTGACAACTTATGACGACTGCGACTT
GACAGTAAAACCAGTTGACCGAGACGATTCGACTTTGACAATTGCGGAAA
ACCAGGACACAAATACAATAGATACTGATGATTTTGACGTTACGATGATT
ACTGAtgaccaaaacaaaacaaatgacTTAACAACAAATACTGATGACAT
AAATACAAATGACGCTATCCAACTGGACAAAGTGACAAATCCTGACAGTG
TTGACGACTCAAGTACAGCGACAGGGTTGCTCCGTGACGACCATCCAACC
GACGAGACTGTTGACAACAACAATATCTTTGAGGNTCAAGTACAGCGACA
GGGTTGCTCCGTGACGACCATCCAACCGACGAGACTGTTGACGCCACAGC
TGACAACAACAATATCTTTGAGGCGTCAGGTAATTACGAACAAACTGATA
ATACGGTTACTGATCACGAGGACTGTAATAAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027318XLOC_027318Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043634-proteinTCONS_00043634-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043634-exon-sc0004415-1491911889:3761..4444TCONS_00043634-exon-sc0004415-1491911889:3761..4444Clytia hemisphaericaexon
TCONS_00043634-exon-sc0004415-1510915933:3761..4444TCONS_00043634-exon-sc0004415-1510915933:3761..4444Clytia hemisphaericaexon
TCONS_00043634-exon-sc0004415-1575043694:3761..4444TCONS_00043634-exon-sc0004415-1575043694:3761..4444Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004415supercontigsc0004415:3761..4444 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.394183	0.258145	0.507407	0.330946	0.803455	0.306278	0.234428	0.113838	0.803686	0.319038	0	0.374909	0.277926	1.31765	0.157408	0.158722	0.40907	0.0983789	0.0793971	0.0830834	0.0722145	0	0.179108	0.214566	0.479901	0.447538	0.20483	0	0.411609	0.605117
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043634 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top