TCONS_00043637 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043637
Unique NameTCONS_00043637
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length396

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043637 ID=TCONS_00043637|Name=TCONS_00043637|organism=Clytia hemisphaerica|type=transcript|length=396bp
TGGTGTTGCGGTGTCAGACTACACACAAGTAGGGGATGTTTGTAACTTTG
CAAAATGATTTAGATCAGCATGTCAGCTATGTTTCTTTCATTCATGTGAT
TACAAGAGGTTCAAACTGTAAATAGAAATTAAGACAAACATAAGTAACta
gaaacaaaataaataaaaagaactAAATTCTAAGACTAGAATGTGAAAAA
TGACTAAGTCCAGAATATGACAAAATGGCTAAGTCCAGATACTGTAAGAA
AGGCATCTGGGAAAATATATAGCTATCAAGAtatcaaaatatattgtaaa
gaaaaCTAGGAAAAACTTAACCTAACTTAACCTAAGTCCAGGTGTTGTGC
CTCAACACTGGACTGATGAGCTGATGaggcaaacaaaacaaaatgt
Run BLAST on NCBI

transcript from alignment at sc0004418:1168..1563

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043637 ID=TCONS_00043637|Name=TCONS_00043637|organism=Clytia hemisphaerica|type=transcript|length=396bp|location=Sequence derived from alignment at sc0004418:1168..1563 (Clytia hemisphaerica)
acattttgttttgtttgcctCATCAGCTCATCAGTCCAGTGTTGAGGCAC
AACACCTGGACTTAGGTTAAGTTAGGTTAAGTTTTTCCTAGttttcttta
caatatattttgataTCTTGATAGCTATATATTTTCCCAGATGCCTTTCT
TACAGTATCTGGACTTAGCCATTTTGTCATATTCTGGACTTAGTCATTTT
TCACATTCTAGTCTTAGAATTTagttctttttatttattttgtttctaGT
TACTTATGTTTGTCTTAATTTCTATTTACAGTTTGAACCTCTTGTAATCA
CATGAATGAAAGAAACATAGCTGACATGCTGATCTAAATCATTTTGCAAA
GTTACAAACATCCCCTACTTGTGTGTAGTCTGACACCGCAACACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027321XLOC_027321Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043637-exon-sc0004418-1491911889:1168..1563TCONS_00043637-exon-sc0004418-1491911889:1168..1563Clytia hemisphaericaexon
TCONS_00043637-exon-sc0004418-1510915933:1168..1563TCONS_00043637-exon-sc0004418-1510915933:1168..1563Clytia hemisphaericaexon
TCONS_00043637-exon-sc0004418-1575043694:1168..1563TCONS_00043637-exon-sc0004418-1575043694:1168..1563Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004418supercontigsc0004418:1168..1563 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.17077	0.971114	1.36438	0.990094	0.761223	0	0	0	0	0.594089	0.636307	0.313295	0.405649	0.506078	0.532484	0.462441	0.536844	0.76748	0.425019	0.844162	0	1.70267	0.21753	0.197766	0.440824	0.434609	0.356611	1.51761	0.70327	0.345918
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043637 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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