TCONS_00043664 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043664
Unique NameTCONS_00043664
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length472

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043664 ID=TCONS_00043664|Name=TCONS_00043664|organism=Clytia hemisphaerica|type=transcript|length=472bp
AATGGACATAAACGTGTTCACGCATTGAAATTTCAAAGTGTTGTCATACC
TAATGGCCTCATTGCAAATTTGTTTGGCCCAATTGAAGGCAAAAGACATG
ACAGTGCGATGCTAGCAGAGTCAAGGCTACTTACAGAATTGCAACAACAT
TCTCATGCTCCAAATGGAAGAAATCTCTGTATTTATGGGGATCCAGCATA
CCCTTTAAGAGTGCAACTTCAAGCACCTTTTAGAGGACCTGGACTCACAA
ACCAAGAAAAGGACTTTAACAAAAGCATGAGTCAAGTTAGAGTGTCAGTT
GAATGGGTCTTTGGGGATATAATCaactattttaaatttctgGACTTTAA
AAAGAATCTTAAAGTTCGGTTGAGTGCTGTTGGAAAAATGTACTTTACAT
GTGCTTTACTCCAAAACTGCAGAACCTGCTTATATGGAAATCAAGTgtgt
gatttttttgattgtgaGCCTC
Run BLAST on NCBI

protein sequence of TCONS_00043664-protein

>TCONS_00043664-protein ID=TCONS_00043664-protein|Name=TCONS_00043664-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
NGHKRVHALKFQSVVIPNGLIANLFGPIEGKRHDSAMLAESRLLTELQQH
SHAPNGRNLCIYGDPAYPLRVQLQAPFRGPGLTNQEKDFNKSMSQVRVSV
EWVFGDIINYFKFLDFKKNLKVRLSAVGKMYFTCALLQNCRTCLYGNQVC
DFFDCEP
Run BLAST on NCBI

transcript from alignment at sc0004447:1117..1588

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043664 ID=TCONS_00043664|Name=TCONS_00043664|organism=Clytia hemisphaerica|type=transcript|length=472bp|location=Sequence derived from alignment at sc0004447:1117..1588 (Clytia hemisphaerica)
GAGGCtcacaatcaaaaaaatcacacACTTGATTTCCATATAAGCAGGTT
CTGCAGTTTTGGAGTAAAGCACATGTAAAGTACATTTTTCCAACAGCACT
CAACCGAACTTTAAGATTCTTTTTAAAGTCcagaaatttaaaatagttGA
TTATATCCCCAAAGACCCATTCAACTGACACTCTAACTTGACTCATGCTT
TTGTTAAAGTCCTTTTCTTGGTTTGTGAGTCCAGGTCCTCTAAAAGGTGC
TTGAAGTTGCACTCTTAAAGGGTATGCTGGATCCCCATAAATACAGAGAT
TTCTTCCATTTGGAGCATGAGAATGTTGTTGCAATTCTGTAAGTAGCCTT
GACTCTGCTAGCATCGCACTGTCATGTCTTTTGCCTTCAATTGGGCCAAA
CAAATTTGCAATGAGGCCATTAGGTATGACAACACTTTGAAATTTCAATG
CGTGAACACGTTTATGTCCATT

Coding sequence (CDS) from alignment at sc0004447:1117..1588

>TCONS_00043664 ID=TCONS_00043664|Name=TCONS_00043664|organism=Clytia hemisphaerica|type=CDS|length=471bp|location=Sequence derived from alignment at sc0004447:1117..1588 (Clytia hemisphaerica)
AGGCtcacaatcaaaaaaatcacacACTTGATTTCCATATAAGCAGGTTC
TGCAGTTTTGGAGTAAAGCACATGTAAAGTACATTTTTCCAACAGCACTC
AACCGAACTTTAAGATTCTTTTTAAAGTCcagaaatttaaaatagttGAT
TATATCCCCAAAGACCCATTCAACTGACACTCTAACTTGACTCATGCTTT
TGTTAAAGTCCTTTTCTTGGTTTGTGAGTCCAGGTCCTCTAAAAGGTGCT
TGAAGTTGCACTCTTAAAGGGTATGCTGGATCCCCATAAATACAGAGATT
TCTTCCATTTGGAGCATGAGAATGTTGTTGCAATTCTGTAAGTAGCCTTG
ACTCTGCTAGCATCGCACTGTCATGTCTTTTGCCTTCAATTGGGCCAAAC
AAATTTGCAATGAGGCCATTAGGTATGACAACACTTTGAAATTTCAATGC
GTGAACACGTTTATGTCCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027348XLOC_027348Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043664-exon-sc0004447-1491911889:1117..1588TCONS_00043664-exon-sc0004447-1491911889:1117..1588Clytia hemisphaericaexon
TCONS_00043664-exon-sc0004447-1510915933:1117..1588TCONS_00043664-exon-sc0004447-1510915933:1117..1588Clytia hemisphaericaexon
TCONS_00043664-exon-sc0004447-1575043694:1117..1588TCONS_00043664-exon-sc0004447-1575043694:1117..1588Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043664-proteinTCONS_00043664-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004447supercontigsc0004447:1117..1588 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.131545	0.610946	0.747144	0.909576	0.287504	1.38744	1.786	0.113675	0.563217	0	0.359361	0.0897153	0	0.0765986	0.41101	0.405065	0.311384	0.573591	0.600222	0.521702	0.954255	0	0.140617	0	0	0.18497	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027806HARBI1_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043664 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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