TCONS_00043835 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043835
Unique NameTCONS_00043835
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length421

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043835 ID=TCONS_00043835|Name=TCONS_00043835|organism=Clytia hemisphaerica|type=transcript|length=421bp
NNCAAAAACATAGCTCAGAGGTAGCAAAGGTccattataagaaaaaacag
tCAAGAATTGTGGCAACGGAGGGGAAAAGATGCATGGAAAAAATGCTTGG
AGACGCACGAAAGGACCAACAACAAGCCATTTCAGGTATATTCaaagatt
tggctgaaatatccaAATTTCCATCGATGAGCGTGGCAAGTGAAAAAGCA
GGACCATCGACAAGCAATGTAGCTTCGCCTTATGTGGTAAACTCTGACGA
AGATATGCTTGATTCTGAGAGCATCGAAAGACAAAGTATAGAAGTTAATA
CTATTTTGCAACGAGTTCAAAACATGTGTTCGCCGGATGATAACGCAAAT
CTTGACGACAGTGAGGGCATCCAAATGGAAGTAGTGAGATCAGTGGATGA
AGAAGCACCCGTCACGTTGGA
Run BLAST on NCBI

protein sequence of TCONS_00043835-protein

>TCONS_00043835-protein ID=TCONS_00043835-protein|Name=TCONS_00043835-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
QKHSSEVAKVHYKKKQSRIVATEGKRCMEKMLGDARKDQQQAISGIFKDL
AEISKFPSMSVASEKAGPSTSNVASPYVVNSDEDMLDSESIERQSIEVNT
ILQRVQNMCSPDDNANLDDSEGIQMEVVRSVDEEAPVTL
Run BLAST on NCBI

transcript from alignment at sc0004642:4848..5485+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043835 ID=TCONS_00043835|Name=TCONS_00043835|organism=Clytia hemisphaerica|type=transcript|length=638bp|location=Sequence derived from alignment at sc0004642:4848..5485+ (Clytia hemisphaerica)
NNCAAAAACATAGCTCAGAGGTAGCAAAGGTccattataagaaaaaacag
tCAAGAATTGTGGCAACGGAGGGGAAAAGATGCATGGAAAAAATGCTTGG
AGACGCACGAAAGGACCAACAACAAGCCATTTCAGGTATGTATACCGAGT
TTGTCGTTCTCCATCTATAATTATacgtcaatcgatacttcgGTTAGCAG
CTGTattgagagaaaaagagagaagTATATGTGGTAGTGTGAAGGGTTCG
AGcacagacttgcaccgcaaaggactgtgttcgaatcccatgCACTTCCA
GGCAGGATTTATTTTATGGCGAAAGATTCACTAACTTCACTTATAATTTC
AGGTATATTCaaagatttggctgaaatatccaAATTTCCATCGATGAGCG
TGGCAAGTGAAAAAGCAGGACCATCGACAAGCAATGTAGCTTCGCCTTAT
GTGGTAAACTCTGACGAAGATATGCTTGATTCTGAGAGCATCGAAAGACA
AAGTATAGAAGTTAATACTATTTTGCAACGAGTTCAAAACATGTGTTCGC
CGGATGATAACGCAAATCTTGACGACAGTGAGGGCATCCAAATGGAAGTA
GTGAGATCAGTGGATGAAGAAGCACCCGTCACGTTGGA

Coding sequence (CDS) from alignment at sc0004642:4848..5485+

>TCONS_00043835 ID=TCONS_00043835|Name=TCONS_00043835|organism=Clytia hemisphaerica|type=CDS|length=834bp|location=Sequence derived from alignment at sc0004642:4848..5485+ (Clytia hemisphaerica)
CAAAAACATAGCTCAGAGGTAGCAAAGGTccattataagaaaaaacagtC
AAGAATTGTGGCAACGGAGGGGAAAAGATGCATGGAAAAAATGCTTGGAG
ACGCACGAAAGGACCAACAACAAGCCATTTCAGGTATATTCaaagatttg
gctgaaatatccaAATTTCCATCGATGAGCGTGGCAAGTGAAAAAGCAGG
ACCATCGACAAGCAATGTAGCTTCGCCTTATGTGGTAAACTCTGACGAAG
ATATGCTTGATTCTGAGAGCATCGAAAGACAAAGTATAGAAGTTAATACT
ATTTTGCAACGAGTTCAAAACATGTGTTCGCCGGATGATAACGCAAATCT
TGACGACAGTGAGGGCATCCAAATGGAAGTAGTGAGATCAGTGGATGAAG
AAGCACCCGTCACGTTGCAAAAACATAGCTCAGAGGTAGCAAAGGTccat
tataagaaaaaacagtCAAGAATTGTGGCAACGGAGGGGAAAAGATGCAT
GGAAAAAATGCTTGGAGACGCACGAAAGGACCAACAACAAGCCATTTCAG
GTATATTCaaagatttggctgaaatatccaAATTTCCATCGATGAGCGTG
GCAAGTGAAAAAGCAGGACCATCGACAAGCAATGTAGCTTCGCCTTATGT
GGTAAACTCTGACGAAGATATGCTTGATTCTGAGAGCATCGAAAGACAAA
GTATAGAAGTTAATACTATTTTGCAACGAGTTCAAAACATGTGTTCGCCG
GATGATAACGCAAATCTTGACGACAGTGAGGGCATCCAAATGGAAGTAGT
GAGATCAGTGGATGAAGAAGCACCCGTCACGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027507XLOC_027507Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043835-proteinTCONS_00043835-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043835-exon-sc0004642-1491911889:4848..4982TCONS_00043835-exon-sc0004642-1491911889:4848..4982Clytia hemisphaericaexon
TCONS_00043835-exon-sc0004642-1510915933:4848..4982TCONS_00043835-exon-sc0004642-1510915933:4848..4982Clytia hemisphaericaexon
TCONS_00043835-exon-sc0004642-1575043694:4848..4982TCONS_00043835-exon-sc0004642-1575043694:4848..4982Clytia hemisphaericaexon
TCONS_00043835-exon-sc0004642-1491911889:5200..5485TCONS_00043835-exon-sc0004642-1491911889:5200..5485Clytia hemisphaericaexon
TCONS_00043835-exon-sc0004642-1510915933:5200..5485TCONS_00043835-exon-sc0004642-1510915933:5200..5485Clytia hemisphaericaexon
TCONS_00043835-exon-sc0004642-1575043694:5200..5485TCONS_00043835-exon-sc0004642-1575043694:5200..5485Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004642supercontigsc0004642:4848..5485 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.11466	0.307485	0	0	0.225678	0	0	0.759046	0.564083	1.48176	0.169546	1.00307	0.25607	0.693503	0.0950256	0	0	0	0	0	0	0	0.191878	0	1.64496	0.283575	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043835 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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