TCONS_00043844 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043844
Unique NameTCONS_00043844
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length877

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043844 ID=TCONS_00043844|Name=TCONS_00043844|organism=Clytia hemisphaerica|type=transcript|length=877bp
TACCTGAACAACTTTGGATCACACTTTCTTATACCTAATATTTTCCTTCC
TACTCGTATTACTGACCACTCTATGACACTTATTGACACTTATATCTTTT
cctcaatttctgaaaaacacAGTTTTTCAGGTAATCTGCTTTATTCCATC
TCTGATCATCTTCCCCAATTTCACCTTATCTGTGGTTCTTCTAACAAACC
AAAGCCTGGTAAATCTTCTAGGAAAGATTGGAAAAACTTTgaccaaaata
attttattctaGACTTTCTTGGCACTGATTGGGCAAACAAATTATATCAC
ATAACAGATGTTGATtaagatttcaaaacattctATGATCTAATTCAAAA
CCTAATTGATCAACATGTTCCAACTGTAATTGTGACAAAACGCCAACAAA
AAACCAGAGCTAAACCATGGATCACCCCTGGGATTATCAAATCAATTTCT
CAACGTCAATATTACTCAAGGAAATATATCAAAACCAAAGACCCAATTAT
GAAAACCGCAtcagaaattatatttttcttgaCCGTGTCAACCCAGCTGa
agttttattaattattaaatcCCTTCCCCTAAATAAATCATCTGGTCCCA
ATAGCATCCCCCAAAAAATCCTTcgccttttaaaatttgaccttTCTGGA
CCgctatcttttctttttaaccttTCTTTTGAATATGGTTCTTTCCCCAC
AATGCTTAAACTTTGCAAAGTAATTcctgttttcaaaaacaaaggctcCC
CTCTTGAGATCTCTAATTACCTCCCAATTTCTTTACTTTCCAACAtcgaa
aaaattcttgaaaaacttaTGTACTCTCGTATCATTACTTTTCTAGATTC
TCATCGCGTATTTTTTGAACGTCAATT
Run BLAST on NCBI

transcript from alignment at sc0004652:5077..5953

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043844 ID=TCONS_00043844|Name=TCONS_00043844|organism=Clytia hemisphaerica|type=transcript|length=877bp|location=Sequence derived from alignment at sc0004652:5077..5953 (Clytia hemisphaerica)
AATTGACGTTCAAAAAATACGCGATGAGAATCTAGAAAAGTAATGATACG
AGAGTACAtaagtttttcaagaattttttcgaTGTTGGAAAGTAAAGAAA
TTGGGAGGTAATTAGAGATCTCAAGAGGGgagcctttgtttttgaaaaca
ggAATTACTTTGCAAAGTTTAAGCATTGTGGGGAAAGAACCATATTCAAA
AGAaaggttaaaaagaaaagatagcGGTCCAGAaaggtcaaattttaaaa
ggcgAAGGATTTTTTGGGGGATGCTATTGGGACCAGATGATTTATTTAGG
GGAAGGgatttaataattaataaaacttCAGCTGGGTTGACACGGtcaag
aaaaatataatttctgaTGCGGTTTTCATAATTGGGTCTTTGGTTTTGAT
ATATTTCCTTGAGTAATATTGACGTTGAGAAATTGATTTGATAATCCCAG
GGGTGATCCATGGTTTAGCTCTGGTTTTTTGTTGGCGTTTTGTCACAATT
ACAGTTGGAACATGTTGATCAATTAGGTTTTGAATTAGATCATagaatgt
tttgaaatcttaATCAACATCTGTTATGTGATATAATTTGTTTGCCCAAT
CAGTGCCAAGAAAGTCtagaataaaattattttggtcAAAGTTTTTCCAA
TCTTTCCTAGAAGATTTACCAGGCTTTGGTTTGTTAGAAGAACCACAGAT
AAGGTGAAATTGGGGAAGATGATCAGAGATGGAATAAAGCAGATTACCTG
AAAAACTgtgtttttcagaaattgaggAAAAGATATAAGTGTCAATAAGT
GTCATAGAGTGGTCAGTAATACGAGTAGGAAGGAAAATATTAGGTATAAG
AAAGTGTGATCCAAAGTTGTTCAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027514XLOC_027514Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043844-exon-sc0004652-1491911889:5077..5953TCONS_00043844-exon-sc0004652-1491911889:5077..5953Clytia hemisphaericaexon
TCONS_00043844-exon-sc0004652-1510915933:5077..5953TCONS_00043844-exon-sc0004652-1510915933:5077..5953Clytia hemisphaericaexon
TCONS_00043844-exon-sc0004652-1575043694:5077..5953TCONS_00043844-exon-sc0004652-1575043694:5077..5953Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004652supercontigsc0004652:5077..5953 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.07251	1.00005	2.78709	2.69317	3.9126	3.27186	2.66039	2.04134	0.458447	1.17862	1.26209	1.22931	0.649221	0.704029	1.1587	1.22732	0.610656	0.972592	1.22378	1.43583	1.72776	2.06083	0.254421	0.754165	0.302295	0.777603	2.99137	2.68105	1.41727	0.972583
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043844 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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