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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043881 ID=TCONS_00043881|Name=TCONS_00043881|organism=Clytia hemisphaerica|type=transcript|length=904bp
caaaaacattcgaatcgaaaCAAAGTCAAAATCCAGCTTTGAgaagtgaa
gtgaaaagtttggAGCGTTTCAGAGCATTTCCATGTTTCGTTGAATTGTg
attttatttggaattttattatttttcacgaTGAGCTGGTTGACTGAAGA
ATGGAAAGAGCAGCTTCCAGCTGAAGCTACAAACTACATACAAAATCTGG
AAGAAATTGTTGAGAAAAGCAAGAAAGAACTGAAAGAGTATCAATTCAAA
ATCCAGTCATTGGAAGCAGAACTTGAAAACAGTAAACagaaatctgagga
aaatattGGTGAAACAAATGCATTAGAACGTCAGATCAATACTTTGTATG
CCGAGCTTgagaaagaaaaggaagaatCGAAGAACCATCTTGCATCAAAG
ACGAGCAAGGAAAATATCATTTGTGGCTTGAGAGAAGAAGTTGATCGATT
GAGGTCTGATTTTGGTGAAGTAAAATCAACAAATACAAAATTAGTTGGTC
AGCTAGAAACTTTGGAGACtgaacaaaatcaaaatgatcatcgtaaaaat
gaagatcttgacAGACTGAAAGAGTTGAAAGTTTTGAATGAACAAAGACT
TGAAGGTGAGATAGATATCCAAGCAATTACAGAATTTAGAATAAGATTTT
ATCTTCGCATTAAGGATCGAGAGAAATTACAGCTTCATCAATCCCCCGGA
GGTGGTACTAGGGCTGCGATCGAGCTGACAGGGGTGTGCTGCGGGTATCA
GAAGGTATCAGTCAGGACTAAGTCATATTTTTGATACTTTGTTTCGTCTT
TAAAATATTAGCAAAAATCTTCACACGCATGTCTGTCTTTTATCTTTTAT
CCACTCGATTTTAAGTTTGCATTTCTAAATTCTTGTCAATTTTATAATCT
CTAT Run BLAST on NCBI protein sequence of TCONS_00043881-protein >TCONS_00043881-protein ID=TCONS_00043881-protein|Name=TCONS_00043881-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
MSWLTEEWKEQLPAEATNYIQNLEEIVEKSKKELKEYQFKIQSLEAELEN
SKQKSEENIGETNALERQINTLYAELEKEKEESKNHLASKTSKENIICGL
REEVDRLRSDFGEVKSTNTKLVGQLETLETEQNQNDHRKNEDLDRLKELK
VLNEQRLEGEIDIQAITEFRIRFYLRIKDREKLQLHQSPGGGTRAAIELT
GVCCGYQKVSVRTKSYF Run BLAST on NCBI transcript from alignment at sc0004695:4868..5771 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043881 ID=TCONS_00043881|Name=TCONS_00043881|organism=Clytia hemisphaerica|type=transcript|length=904bp|location=Sequence derived from alignment at sc0004695:4868..5771 (Clytia hemisphaerica)
ATAGAGATTATAAAATTGACAAGAATTTAGAAATGCAAACTTAAAATCGA
GTGGATAAAAGATAAAAGACAGACATGCGTGTGAAGATTTTTGCTAATAT
TTTAAAGACGAAACAAAGTATCAAAAATATGACTTAGTCCTGACTGATAC
CTTCTGATACCCGCAGCACACCCCTGTCAGCTCGATCGCAGCCCTAGTAC
CACCTCCGGGGGATTGATGAAGCTGTAATTTCTCTCGATCCTTAATGCGA
AGATAAAATCTTATTCTAAATTCTGTAATTGCTTGGATATCTATCTCACC
TTCAAGTCTTTGTTCATTCAAAACTTTCAACTCTTTCAGTCTgtcaagat
cttcatttttacgatgatcattttgattttgttcaGTCTCCAAAGTTTCT
AGCTGACCAACTAATTTTGTATTTGTTGATTTTACTTCACCAAAATCAGA
CCTCAATCGATCAACTTCTTCTCTCAAGCCACAAATGATATTTTCCTTGC
TCGTCTTTGATGCAAGATGGTTCTTCGattcttccttttctttctcAAGC
TCGGCATACAAAGTATTGATCTGACGTTCTAATGCATTTGTTTCACCaat
attttcctcagatttctGTTTACTGTTTTCAAGTTCTGCTTCCAATGACT
GGATTTTGAATTGATACTCTTTCAGTTCTTTCTTGCTTTTCTCAACAATT
TCTTCCAGATTTTGTATGTAGTTTGTAGCTTCAGCTGGAAGCTGCTCTTT
CCATTCTTCAGTCAACCAGCTCAtcgtgaaaaataataaaattccaaata
aaatcACAATTCAACGAAACATGGAAATGCTCTGAAACGCTccaaacttt
tcacttcacttcTCAAAGCTGGATTTTGACTTTGtttcgattcgaatgtt
tttg Coding sequence (CDS) from alignment at sc0004695:4868..5771 >TCONS_00043881 ID=TCONS_00043881|Name=TCONS_00043881|organism=Clytia hemisphaerica|type=CDS|length=654bp|location=Sequence derived from alignment at sc0004695:4868..5771 (Clytia hemisphaerica)
TCAAAAATATGACTTAGTCCTGACTGATACCTTCTGATACCCGCAGCACA
CCCCTGTCAGCTCGATCGCAGCCCTAGTACCACCTCCGGGGGATTGATGA
AGCTGTAATTTCTCTCGATCCTTAATGCGAAGATAAAATCTTATTCTAAA
TTCTGTAATTGCTTGGATATCTATCTCACCTTCAAGTCTTTGTTCATTCA
AAACTTTCAACTCTTTCAGTCTgtcaagatcttcatttttacgatgatca
ttttgattttgttcaGTCTCCAAAGTTTCTAGCTGACCAACTAATTTTGT
ATTTGTTGATTTTACTTCACCAAAATCAGACCTCAATCGATCAACTTCTT
CTCTCAAGCCACAAATGATATTTTCCTTGCTCGTCTTTGATGCAAGATGG
TTCTTCGattcttccttttctttctcAAGCTCGGCATACAAAGTATTGAT
CTGACGTTCTAATGCATTTGTTTCACCaatattttcctcagatttctGTT
TACTGTTTTCAAGTTCTGCTTCCAATGACTGGATTTTGAATTGATACTCT
TTCAGTTCTTTCTTGCTTTTCTCAACAATTTCTTCCAGATTTTGTATGTA
GTTTGTAGCTTCAGCTGGAAGCTGCTCTTTCCATTCTTCAGTCAACCAGC
TCAt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043881-exon-sc0004695-1491911889:4868..5771 | TCONS_00043881-exon-sc0004695-1491911889:4868..5771 | Clytia hemisphaerica | exon |
| TCONS_00043881-exon-sc0004695-1510915933:4868..5771 | TCONS_00043881-exon-sc0004695-1510915933:4868..5771 | Clytia hemisphaerica | exon |
| TCONS_00043881-exon-sc0004695-1575043694:4868..5771 | TCONS_00043881-exon-sc0004695-1575043694:4868..5771 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004695 | supercontig | sc0004695:4868..5771 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR018463 | Centromere_CenpF_N |
Blast
The following BLAST results are available for this feature:
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