TCONS_00043991 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043991
Unique NameTCONS_00043991
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length464

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043991 ID=TCONS_00043991|Name=TCONS_00043991|organism=Clytia hemisphaerica|type=transcript|length=464bp
ACAGAGAGCAGTTCCATCGACACTTTCACCATTGTTCATGTTGACGAGAT
CGATATCATTCAAGATTACACGTGTTTCATGTTCGATTTGGATCCTCTTA
AAACGTACAAAAGCAAACCATTCGACTTACAAATCTACAAAAGCAAAGTA
TCTCATGTAGCATCCACACCAGTTATGTTGACATGTGACGCCGCCCACCA
ACCGGTCACGTGGATGAAGGAGGAGGCCCTGGTTACCGCATTCGCCGGGT
ATCCACTTTTCCAGGACAACACATACTCAAGTTACAATGCGTCGTTGTTT
ATTCATCGGATAGGCAAGAATCAGAAAGGAGTTTATAGATGTATCGATGG
CAAGCGACAAACCAGAAGAACGGTGTATTTCAACAGTAAGACATTATTAC
TTAGttggtagtctagcaagctagacgactaatacagacatagtagaaat
aaagcaaaaagtaa
Run BLAST on NCBI

protein sequence of TCONS_00043991-protein

>TCONS_00043991-protein ID=TCONS_00043991-protein|Name=TCONS_00043991-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
TESSSIDTFTIVHVDEIDIIQDYTCFMFDLDPLKTYKSKPFDLQIYKSKV
SHVASTPVMLTCDAAHQPVTWMKEEALVTAFAGYPLFQDNTYSSYNASLF
IHRIGKNQKGVYRCIDGKRQTRRTVYFNSKTLLLSW
Run BLAST on NCBI

transcript from alignment at sc0004813:4107..4922-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043991 ID=TCONS_00043991|Name=TCONS_00043991|organism=Clytia hemisphaerica|type=transcript|length=816bp|location=Sequence derived from alignment at sc0004813:4107..4922- (Clytia hemisphaerica)
ACAGAGAGCAGTTCCATCGACACTTTCACCATTGTTCATGTTGACGAGAT
CGATATCATTCAAGATTACACGTGTTTCATGTTCGATTTGGATCCTCTTA
AAACGTACAAAAGCAAACCATTCGACTTACAAATCTACAAAAGTGAGTTC
TAAAAAATCGTGTTAAGGCCGGTTTCCATTTTCGCGCGAAATGTGCGAAA
ACCTTTTAACGTTTTTGTAAGGTCATTGGTTGGTTGAAAAATAAAGCAAT
TCCATTGGTCAAAATTAAAAGCCGCTGCGTCGGTTAAGAAAAAAGTTGAA
CTTCCTTCAATTTTTTTTTATTCGCGCGAAACTTTTTTATGATGTAAACT
TTTCTTTATGCAAAAAAGGTTGAAATATAACGTGAGTCTTATTTTCGTGG
ATAAGGACAAAATTTGCGAAATTGATCTGGTTAAAGGATTCATTTTCTGG
ATTCTCCAATTTTGATGTTGAGTTTATTTTCTTTTTTACCACAGGCAAAG
TATCTCATGTAGCATCCACACCAGTTATGTTGACATGTGACGCCGCCCAC
CAACCGGTCACGTGGATGAAGGAGGAGGCCCTGGTTACCGCATTCGCCGG
GTATCCACTTTTCCAGGACAACACATACTCAAGTTACAATGCGTCGTTGT
TTATTCATCGGATAGGCAAGAATCAGAAAGGAGTTTATAGATGTATCGAT
GGCAAGCGACAAACCAGAAGAACGGTGTATTTCAACAGTAAGACATTATT
ACTTAGTTGGTAGTCTAGCAAGCTAGACGACTAATACAGACATAGTAGAA
ATAAAGCAAAAAGTAA

Coding sequence (CDS) from alignment at sc0004813:4107..4922-

>TCONS_00043991 ID=TCONS_00043991|Name=TCONS_00043991|organism=Clytia hemisphaerica|type=CDS|length=822bp|location=Sequence derived from alignment at sc0004813:4107..4922- (Clytia hemisphaerica)
GCAAAGTATCTCATGTAGCATCCACACCAGTTATGTTGACATGTGACGCC
GCCCACCAACCGGTCACGTGGATGAAGGAGGAGGCCCTGGTTACCGCATT
CGCCGGGTATCCACTTTTCCAGGACAACACATACTCAAGTTACAATGCGT
CGTTGTTTATTCATCGGATAGGCAAGAATCAGAAAGGAGTTTATAGATGT
ATCGATGGCAAGCGACAAACCAGAAGAACGGTGTATTTCAACAGTAAGAC
ATTATTACTTAGTTGGTAGACAGAGAGCAGTTCCATCGACACTTTCACCA
TTGTTCATGTTGACGAGATCGATATCATTCAAGATTACACGTGTTTCATG
TTCGATTTGGATCCTCTTAAAACGTACAAAAGCAAACCATTCGACTTACA
AATCTACAAAAGCAAAGTATCTCATGTAGCATCCACACCAGTTATGTTGA
CATGTGACGCCGCCCACCAACCGGTCACGTGGATGAAGGAGGAGGCCCTG
GTTACCGCATTCGCCGGGTATCCACTTTTCCAGGACAACACATACTCAAG
TTACAATGCGTCGTTGTTTATTCATCGGATAGGCAAGAATCAGAAAGGAG
TTTATAGATGTATCGATGGCAAGCGACAAACCAGAAGAACGGTGTATTTC
AACAGTAAGACATTATTACTTAGTTGGTAGACAGAGAGCAGTTCCATCGA
CACTTTCACCATTGTTCATGTTGACGAGATCGATATCATTCAAGATTACA
CGTGTTTCATGTTCGATTTGGATCCTCTTAAAACGTACAAAAGCAAACCA
TTCGACTTACAAATCTACAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027649XLOC_027649Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043991-proteinTCONS_00043991-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043991-exon-sc0004813-1575043694:4781..4922TCONS_00043991-exon-sc0004813-1575043694:4781..4922Clytia hemisphaericaexon
TCONS_00043991-exon-sc0004813-1575043694:4107..4428TCONS_00043991-exon-sc0004813-1575043694:4107..4428Clytia hemisphaericaexon
TCONS_00043991-exon-sc0004813-1510915933:4781..4922TCONS_00043991-exon-sc0004813-1510915933:4781..4922Clytia hemisphaericaexon
TCONS_00043991-exon-sc0004813-1510915933:4107..4428TCONS_00043991-exon-sc0004813-1510915933:4107..4428Clytia hemisphaericaexon
TCONS_00043991-exon-sc0004813-1491911889:4781..4922TCONS_00043991-exon-sc0004813-1491911889:4781..4922Clytia hemisphaericaexon
TCONS_00043991-exon-sc0004813-1491911889:4107..4428TCONS_00043991-exon-sc0004813-1491911889:4107..4428Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004813supercontigsc0004813:4107..4922 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
33.6691	30.2549	20.6362	14.487	106.57	76.6513	50.6206	49.9023	47.3653	51.5537	44.4011	35.1177	32.0154	33.3444	16.4324	21.6191	36.4507	32.6505	32.5372	34.2026	49.0988	36.4151	30.1496	36.8373	53.4766	47.5933	28.8067	19.9526	15.5966	17.6211
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
IPR007110Ig-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043991 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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