TCONS_00044007 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044007
Unique NameTCONS_00044007
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length376

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044007 ID=TCONS_00044007|Name=TCONS_00044007|organism=Clytia hemisphaerica|type=transcript|length=376bp
ATGATTTATCCAAAGATTATGACATTCGAACTGGATTGATTATTGTAACA
GAAAATTCTAAAAGTGACGACGACTCATTCCAACAAGACACCCAAGAATC
TTCCAACGATACTCAATTCTTTCAAACCACGACCAATATCATTCTCATTG
CAATCATTTTAGTGATGTTGACTTTTGTATGTTCTCTCTTGGTTTTTATT
GGTTTACGCCACCTTCGAAGTGATTCTAAAAGATATGGTGTCCCTGGATC
TCCTTCGAAGATGGAAATGCATTAAATTGAAATGACAGTACTTTACCATG
CCGTTCAATATTTATTAAGTTGCTCTTCGCTTTGTATTATGTtaggaaaa
tatataaaaatggattttaaaaattg
Run BLAST on NCBI

transcript from alignment at sc0004840:4504..5447-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044007 ID=TCONS_00044007|Name=TCONS_00044007|organism=Clytia hemisphaerica|type=transcript|length=944bp|location=Sequence derived from alignment at sc0004840:4504..5447- (Clytia hemisphaerica)
ATGATTTATCCAAAGATTATGACATTCGAACTGGATTGATTATTGTAACA
GAAAATTCTAAAAGTGAGTTGAAATTTATTATTCTTGACAAAAGAAATAC
TAAAATACAGTACNACTAAATGATGATTTATCCAAAGATTATGACATTCG
AACTGGATTGATTATTGTAACAGAAAATTCTAAAAGTGAGTTGAAATTTA
TTATTCTTGACAAGAAAATACTAAAATACAGTAACTCTATCAAAAATGTA
ACTCATCGACAGTTCATCCGAGGAATTCATAGTCCCTCTCTTATGGCACC
CCTGTGTCACAGACTCGCCAGGACCCCAGCCCCACAGAGAAATTTGGCAG
AAATTTCATCCCCTTTGGAAAAATACCCTTTGATTTCATCCCCACTCGAA
ATTGAATGTTAAAAAATTGCACTCCAAAATCATCCATCCCTGCCGGATTT
TTTTAACTTTGGAACAATTAAATTACTATTCCCATTGGGATTTCAAAAAT
GAGTTTTATCCCCACTTAGGTAAAGTTCCACCGGGACTCTAAATCGAGCA
GAGAGAGCCGTGCGGACGTTTTCCTTTTTGTACTGCACAGGCACAGGGAG
CTTATAATCATCCAATCTTCAATATTCCTAGGTGACGACGACTCATTCCA
ACAAGACACCCAAGAATCTTCCAACGATACTCAATTCTTTCAAACCACGA
CCAATATCATTCTCATTGCAATCATTTTAGTGATGTTGACTTTTGTATGT
TCTCTCTTGGTTTTTATTGGTTTACGCCACCTTCGAAGTGATTCTAAAAG
ATATGGTGTCCCTGGATCTCCTTCGAAGATGGAAATGCATTAAATTGAAA
TGACAGTACTTTACCATGCCGTTCAATATTTATTAAGTTGCTCTTCGCTT
TGTATTATGTTAGGAAAATATATAAAAATGGATTTTAAAAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027663XLOC_027663Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044007-exon-sc0004840-1575043694:5385..5447TCONS_00044007-exon-sc0004840-1575043694:5385..5447Clytia hemisphaericaexon
TCONS_00044007-exon-sc0004840-1575043694:4504..4816TCONS_00044007-exon-sc0004840-1575043694:4504..4816Clytia hemisphaericaexon
TCONS_00044007-exon-sc0004840-1510915933:5385..5447TCONS_00044007-exon-sc0004840-1510915933:5385..5447Clytia hemisphaericaexon
TCONS_00044007-exon-sc0004840-1510915933:4504..4816TCONS_00044007-exon-sc0004840-1510915933:4504..4816Clytia hemisphaericaexon
TCONS_00044007-exon-sc0004840-1491911889:5385..5447TCONS_00044007-exon-sc0004840-1491911889:5385..5447Clytia hemisphaericaexon
TCONS_00044007-exon-sc0004840-1491911889:4504..4816TCONS_00044007-exon-sc0004840-1491911889:4504..4816Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004840supercontigsc0004840:4504..5447 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.273127	0	0.539533	0	0	0	0	0	0	0	0	0.163461	0.394493	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044007 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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