TCONS_00044048 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044048
Unique NameTCONS_00044048
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length901

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044048 ID=TCONS_00044048|Name=TCONS_00044048|organism=Clytia hemisphaerica|type=transcript|length=901bp
tttataaacagGTAGATCcttaaaagtatcgcttgttattaaaggttttg
tttttaaataagagtgatatcgtttgtttactcatcaattttaattttca
agcttctcgcattgaattgacacagatgtggagcaagattagtcagaaag
aggaaaagaaaaataatttttgtttatgtcagcacaatataacaataggc
agacactgttctgatatgaaatatgtgtttgatatgaaacgggaacactt
atgtaaaaataaaacctttaagttaaTTAAAACTAATAAAGATGAAGCGC
CAAAAAGCAATAAACCTAAAATGACACAACTTTCTGGTTGGCCACCCCGA
AAAACTTTTCCCACACAACGCTTCGATACAtcagcgatcgcccaaatttt
CGGTCCTGTACCGGTAggccaaaaaacaaaaattatcattttcttATGGC
TCCCTCCAGAATTAATAGAAATTTTGACAACCGCTAACCCTGTAtctgat
ttcttttttcatttaggAGATGGATCTTTTGCTGTAGTAGAGCTGGTGAA
ATATAAAGACAAGTTTGTTGTAACTAAAAAGCTTAAAGATCAATTCTCGG
AAGAAACTAGTAAAGTTTTTGCTAAAGAAGCATTGGTCCTCAGCCAAATA
ACAAANTTGTTGTAACTAAAAAGCTTAAAGATCAATTCTCGGAAGAAACT
AGTAAAGTTTTTGCTAAAGAAGCATTGGTCCTCAGCCAAAtaacaaatca
aaatattgttgAAGTATTGGCTGTGTGCGATCAGCCAAAATCTATAATGA
TgccttattttgaattttcatttaaaCCATTTGGAACCGATCTGAAGGCT
AACTGTCTCAATTCATTTCTGGGAACTCTTCATTCAAACGGGTTCACAAC
C
Run BLAST on NCBI

protein sequence of TCONS_00044048-protein

>TCONS_00044048-protein ID=TCONS_00044048-protein|Name=TCONS_00044048-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MWSKISQKEEKKNNFCLCQHNITIGRHCSDMKYVFDMKREHLCKNKTFKL
IKTNKDEAPKSNKPKMTQLSGWPPRKTFPTQRFDTSAIAQIFGPVPVGQK
TKIIIFLWLPPELIEILTTANPVSDFFFHLGDGSFAVVELVKYKDKFVVT
KKLKDQFSEETSKVFAKEALVLSQITXLL
Run BLAST on NCBI

transcript from alignment at sc0004882:4435..5335

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044048 ID=TCONS_00044048|Name=TCONS_00044048|organism=Clytia hemisphaerica|type=transcript|length=901bp|location=Sequence derived from alignment at sc0004882:4435..5335 (Clytia hemisphaerica)
GGTTGTGAACCCGTTTGAATGAAGAGTTCCCAGAAATGAATTGAGACAGT
TAGCCTTCAGATCGGTTCCAAATGGtttaaatgaaaattcaaaataaggc
ATCATTATAGATTTTGGCTGATCGCACACAGCCAATACTTcaacaatatt
ttgatttgttaTTTGGCTGAGGACCAATGCTTCTTTAGCAAAAACTTTAC
TAGTTTCTTCCGAGAATTGATCTTTAAGCTTTTTAGTTACAACAANTTTG
TTATTTGGCTGAGGACCAATGCTTCTTTAGCAAAAACTTTACTAGTTTCT
TCCGAGAATTGATCTTTAAGCTTTTTAGTTACAACAAACTTGTCTTTATA
TTTCACCAGCTCTACTACAGCAAAAGATCCATCTcctaaatgaaaaaaga
aatcagaTACAGGGTTAGCGGTTGTCAAAATTTCTATTAATTCTGGAGGG
AGCCATaagaaaatgataatttttgttttttggccTACCGGTACAGGACC
GaaaatttgggcgatcgctgaTGTATCGAAGCGTTGTGTGGGAAAAGTTT
TTCGGGGTGGCCAACCAGAAAGTTGTGTCATTTTAGGTTTATTGCTTTTT
GGCGCTTCATCTTTATTAGTTTTAAttaacttaaaggttttatttttaca
taagtgttcccgtttcatatcaaacacatatttcatatcagaacagtgtc
tgcctattgttatattgtgctgacataaacaaaaattatttttcttttcc
tctttctgactaatcttgctccacatctgtgtcaattcaatgcgagaagc
ttgaaaattaaaattgatgagtaaacaaacgatatcactcttatttaaaa
acaaaacctttaataacaagcgatacttttaagGATCTACctgtttataa
a

Coding sequence (CDS) from alignment at sc0004882:4435..5335

>TCONS_00044048 ID=TCONS_00044048|Name=TCONS_00044048|organism=Clytia hemisphaerica|type=CDS|length=540bp|location=Sequence derived from alignment at sc0004882:4435..5335 (Clytia hemisphaerica)
TTACAACAANTTTGTTATTTGGCTGAGGACCAATGCTTCTTTAGCAAAAA
CTTTACTAGTTTCTTCCGAGAATTGATCTTTAAGCTTTTTAGTTACAACA
AACTTGTCTTTATATTTCACCAGCTCTACTACAGCAAAAGATCCATCTcc
taaatgaaaaaagaaatcagaTACAGGGTTAGCGGTTGTCAAAATTTCTA
TTAATTCTGGAGGGAGCCATaagaaaatgataatttttgttttttggccT
ACCGGTACAGGACCGaaaatttgggcgatcgctgaTGTATCGAAGCGTTG
TGTGGGAAAAGTTTTTCGGGGTGGCCAACCAGAAAGTTGTGTCATTTTAG
GTTTATTGCTTTTTGGCGCTTCATCTTTATTAGTTTTAAttaacttaaag
gttttatttttacataagtgttcccgtttcatatcaaacacatatttcat
atcagaacagtgtctgcctattgttatattgtgctgacataaacaaaaat
tatttttcttttcctctttctgactaatcttgctccacat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027701XLOC_027701Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044048-proteinTCONS_00044048-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044048-exon-sc0004882-1491911889:4435..5335TCONS_00044048-exon-sc0004882-1491911889:4435..5335Clytia hemisphaericaexon
TCONS_00044048-exon-sc0004882-1510915933:4435..5335TCONS_00044048-exon-sc0004882-1510915933:4435..5335Clytia hemisphaericaexon
TCONS_00044048-exon-sc0004882-1575043694:4435..5335TCONS_00044048-exon-sc0004882-1575043694:4435..5335Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004882supercontigsc0004882:4435..5335 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.512983	0.203769	0.86359	0.426657	0.626651	0.280874	0.132039	0.49421	0.17337	0.217441	0	0.28279	0.464254	0.720203	0.234219	0.238702	0.231576	0.237605	0.327244	0.137305	0.477073	0.14699	0.0634532	0.175089	0.551086	0.64463	0.647258	0.481179	0.574578	0.310492
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011009Kinase-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044048 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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