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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044126 ID=TCONS_00044126|Name=TCONS_00044126|organism=Clytia hemisphaerica|type=transcript|length=1660bp
aaaaaacatttgaagAACAAATCTATAATTGGCTaataaaattacaataa
aaacagttttgaaaaagaCAAAACGAAAAgctaaaaacagttaaaaataa
ATACCTAGAGACTATTATGTATGAGTTGTAAAATCGTAATAATGGCATAA
AATGGGACCGAAGATGTAAATGACTGGTATAATAAAAAGACTACGTCGTG
AACAGTTGTATTGTTTTaaatagattttgaatatttaatgTAGGTTTTTG
TTCTATAATGAGAAATGATTCAGTAATTTCTCTTGTGTCATTTCTTTTAA
ATCCTTTTGCAATTAACTCAACATCGTCTATTGTGATTGGTTTATGACCG
GACAGCATAGAATGTTTGAAAACAGTGGAGTTTTTATCTCTTCCACTGTG
ATCTAGAACACGTTCAAACACCCTTCTCTCTGTTTCGCCGATGTAGGTTT
CTGTACAATTTTCGTCGGGACAGTTGATCTTGTAGACTACGTTGTTTTCg
tgttctttctttgttttatctttGACGTTGAACATTGAAGATAACCTTTG
ACTTTTAAATattatttgagttttgatttgatcatttacTATTACCGATT
TTAATGTTTTGTTCAAGGATCTTACCAAGGTTTCTCCTTTCTTCCCTTGG
TACGGTAAATAAAGTTTCTTAGTTTTCTCTGGGTCAATGGTATCATCATT
AGCTGGTGGTTCGGCTGGTTGGTTTAACTTTTCTTCGACTTTACGTATTG
CAGGAGTTTTCCCGAAATTATTAGCCCAAGGAAATATCTTTCAATACAAC
TTGGTATTAGTAAAAACTTTGTTCTCAAAATCAGAGGATTAACATTTATG
ACTAAGAGAATAAGGCTTAGAATAGAGACGCAGATTACTTTATTGAATCA
TCGTCAGCCTAGCAAATAAAAAGCTTACAGAGTGTCTTATTTATACAAAA
GTCTACAAAATTACATGCGATAAAAGGTAataaaaacacttaaaaagctg
tTCTTTATCATTCATACTTTTTGCAATNTCCAGTCATGAATGTTTCCACA
GACACCGTAGTGTCTTAGCTTTATCATGAGTTTTCTATGAACCACCTTAT
CAAAAGCCTTACTAAAGTCAAGCAATACACTATCAACTTGTTCTTTATCA
TTCATACTTTTAGCAAGTTTATGTACAGTTTGCAGAAGTTGTGTCTCACA
GGATCTGCGCTTTCTAAAGCCATGCTGTGATTCAATGAGAACTTTCTCAC
TTTCCAAGTGGTTTATTACATGGCTGTGAACTATGTGCTCCAAAACCTTA
CACTCTAATACCTATAAACTCTCAAATGTGATAATGCCATGATTTGTTCA
TCTTTGTTcagtttcaaaatattcattaCATAATGCATTGCGCTgagttt
tcccgatttccccTTTTACTCAAGAAATCATAAACCTTGGACCAGATGAT
AATATTGATTTGCTTGAAAATTCTCTATCCAAGTGTGAAGATTACTTCAA
TGTATTGAACTTCATCAATGAAAACCTATTGGAAGCAGAGGTGGATGTTG
AGGAGGagaaatttttataataaatCGGGAAAATCGAGGAATTTTTTTCG
CGCAATGCATTATGTACagtaatatatatttttgtaaaacaaTTACCCAT
TCAAACAAAG Run BLAST on NCBI protein sequence of TCONS_00044126-protein >TCONS_00044126-protein ID=TCONS_00044126-protein|Name=TCONS_00044126-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
MFNVKDKTKKEHENNVVYKINCPDENCTETYIGETERRVFERVLDHSGRD
KNSTVFKHSMLSGHKPITIDDVELIAKGFKRNDTREITESFLIIEQKPTL
NIQNLFKTIQLFTT Run BLAST on NCBI transcript from alignment at sc0005014:172..1831 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044126 ID=TCONS_00044126|Name=TCONS_00044126|organism=Clytia hemisphaerica|type=transcript|length=1660bp|location=Sequence derived from alignment at sc0005014:172..1831 (Clytia hemisphaerica)
CTTTGTTTGAATGGGTAAttgttttacaaaaatatatattactGTACATA
ATGCATTGCGCGAAAAAAATTCCTCGATTTTCCCGatttattataaaaat
ttctCCTCCTCAACATCCACCTCTGCTTCCAATAGGTTTTCATTGATGAA
GTTCAATACATTGAAGTAATCTTCACACTTGGATAGAGAATTTTCAAGCA
AATCAATATTATCATCTGGTCCAAGGTTTATGATTTCTTGAGTAAAAggg
gaaatcgggaaaactcAGCGCAATGCATTATGtaatgaatattttgaaac
tgAACAAAGATGAACAAATCATGGCATTATCACATTTGAGAGTTTATAGG
TATTAGAGTGTAAGGTTTTGGAGCACATAGTTCACAGCCATGTAATAAAC
CACTTGGAAAGTGAGAAAGTTCTCATTGAATCACAGCATGGCTTTAGAAA
GCGCAGATCCTGTGAGACACAACTTCTGCAAACTGTACATAAACTTGCTA
AAAGTATGAATGATAAAGAACAAGTTGATAGTGTATTGCTTGACTTTAGT
AAGGCTTTTGATAAGGTGGTTCATAGAAAACTCATGATAAAGCTAAGACA
CTACGGTGTCTGTGGAAACATTCATGACTGGANATTGCAAAAAGTATGAA
TGATAAAGAacagctttttaagtgtttttatTACCTTTTATCGCATGTAA
TTTTGTAGACTTTTGTATAAATAAGACACTCTGTAAGCTTTTTATTTGCT
AGGCTGACGATGATTCAATAAAGTAATCTGCGTCTCTATTCTAAGCCTTA
TTCTCTTAGTCATAAATGTTAATCCTCTGATTTTGAGAACAAAGTTTTTA
CTAATACCAAGTTGTATTGAAAGATATTTCCTTGGGCTAATAATTTCGGG
AAAACTCCTGCAATACGTAAAGTCGAAGAAAAGTTAAACCAACCAGCCGA
ACCACCAGCTAATGATGATACCATTGACCCAGAGAAAACTAAGAAACTTT
ATTTACCGTACCAAGGGAAGAAAGGAGAAACCTTGGTAAGATCCTTGAAC
AAAACATTAAAATCGGTAATAgtaaatgatcaaatcaaaactcaaataat
ATTTAAAAGTCAAAGGTTATCTTCAATGTTCAACGTCaaagataaaacaa
agaaagaacacGAAAACAACGTAGTCTACAAGATCAACTGTCCCGACGAA
AATTGTACAGAAACCTACATCGGCGAAACAGAGAGAAGGGTGTTTGAACG
TGTTCTAGATCACAGTGGAAGAGATAAAAACTCCACTGTTTTCAAACATT
CTATGCTGTCCGGTCATAAACCAATCACAATAGACGATGTTGAGTTAATT
GCAAAAGGATTTAAAAGAAATGACACAAGAGAAATTACTGAATCATTTCT
CATTATAGAACAAAAACCTAcattaaatattcaaaatctatttAAAACAA
TACAACTGTTCACGACGTAGTCTTTTTATTATACCAGTCATTTACATCTT
CGGTCCCATTTTATGCCATTATTACGATTTTACAACTCATACATAATAGT
CTCTAGGTATttatttttaactgtttttagcTTTTCGTTTTGtctttttc
aaaactgtttttattgtaattttattAGCCAATTATAGATTTGTTcttca
aatgtttttt Coding sequence (CDS) from alignment at sc0005014:172..1831 >TCONS_00044126 ID=TCONS_00044126|Name=TCONS_00044126|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at sc0005014:172..1831 (Clytia hemisphaerica)
ATGTTCAACGTCaaagataaaacaaagaaagaacacGAAAACAACGTAGT
CTACAAGATCAACTGTCCCGACGAAAATTGTACAGAAACCTACATCGGCG
AAACAGAGAGAAGGGTGTTTGAACGTGTTCTAGATCACAGTGGAAGAGAT
AAAAACTCCACTGTTTTCAAACATTCTATGCTGTCCGGTCATAAACCAAT
CACAATAGACGATGTTGAGTTAATTGCAAAAGGATTTAAAAGAAATGACA
CAAGAGAAATTACTGAATCATTTCTCATTATAGAACAAAAACCTAcatta
aatattcaaaatctatttAAAACAATACAACTGTTCACGACGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044126-exon-sc0005014-1491911889:172..1831 | TCONS_00044126-exon-sc0005014-1491911889:172..1831 | Clytia hemisphaerica | exon |
| TCONS_00044126-exon-sc0005014-1510915933:172..1831 | TCONS_00044126-exon-sc0005014-1510915933:172..1831 | Clytia hemisphaerica | exon |
| TCONS_00044126-exon-sc0005014-1575043694:172..1831 | TCONS_00044126-exon-sc0005014-1575043694:172..1831 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005014 | supercontig | sc0005014:172..1831 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000305 | GIY-YIG_SF |
Blast
The following BLAST results are available for this feature:
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