TCONS_00044201 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044201
Unique NameTCONS_00044201
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3946

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044201 ID=TCONS_00044201|Name=TCONS_00044201|organism=Clytia hemisphaerica|type=transcript|length=3946bp
aaaaaatctgctggagtatttagttattcaaaagaccgtcGCATTCTCCC
AAACGACTAATCGCTCTAAGTGTGATATAATATATCATTTAGATGTCACT
GCTTACGATTGCTCGTTAATAATACATGGCCTCTAAAATCCCTTTTCTAG
CTAAATACAACGATAAAGTTTTATATATTACTATTTTGAAATTGGGGGAG
TTATGTATTATTACTTCAACCATCTTTTTGCGAAGAACCTTAGTATATTT
TAATATGTTCTTGTCTCACAAACATTTGTTTGTTATATATAGTCATTAAA
AGTGTTTCCATCTTTTAGGGAGTCGACGTCGACGATTAAACAATGTGTGA
TGCTACGGCGGTAAACTTAAAGTTGTTGGAAACTTGGTGTCACCATAGCA
ACTGAAAACAATCAGATAATTTGTAAACgaatgaaatcaattttaagcaa
aGCGAAAGTTGGACCACGATTGGTTATTCAAGATTCAACTATCAAGAAAG
GAATTTTAAATCATTCCCCTATGGAAAATAGAGCTTAATTTCGAAAAGAG
TCATCTACTTGACATTGGGTAAACAGCCCCTTGTCTGGGGCACCCAAGGG
TCACCCTTTAGTGAAGTTGTGCTTCGAAACATACAATTCTCAACTTTGAT
CTTTCAGACTTTTTTACCGTTGTTCTTAATCCAGAGCGCTGGATTTTATT
TTTCCGGTTGTTGGTTGGTTGTACTGGATATAGTGTTATCACTGGTTCTT
AGTAGTATGAAAACTTGTTCTATCGAATGAAGTATTTTGTTCATTTGATC
CAATGGGAATTTTGGGCAAGAAAAGGAGTTATGAAGTTTACGAATTTTGC
AAAGAATCCATATTTTGTACGGGGTCCAGCTTCTGCACTTCACCAAGTGA
TACAGACAACTTATTGTTAACTTATTTTATATTGGCCGAAACGGCAGCCA
GCTCTAACATCCCGACGAACGACATTGGCGGACACTCGCCCGCACCGTCC
CTTCCTGCTTCACAATCTGTTTTTGATTGTACACCGAACTGTGCGCTGAT
TTGGATAATTCTGGcgtttaaagcttttttttgtTTCCATTGCCATTATT
CTCTTAAGTCACAACTTACGGTCTCCCAAATCCTTTGGTGAGAATGGTGA
ATGAAATGTTTTGCTCCTATCTCCAGTGGCAAACATTTCGAAAACTATCC
TGCATCATTGCACTGGTCTACTAAAATTCATATTCTCATCCAAATTCGTC
TTTTTGAATTCATCAAAGTTGCTATATGGTGAGTTGGGTCAGCTTCAACC
ATCATATAACTTGAAAGGAAATATTTCTAACAAAATCAAATGTTGACTTC
AATCTTATTTCAGTATAATTGTCTTATATTGGTTTTCGGCTTCCAAAGGG
CACTTTCTGATTTCACGTTTTGTTTTGATAGACAGCCTTTTTTGCGAATa
cttactttaatgggataaatttcgcagattttgcggatttgggtgtcatc
cgcgaaatcccaatgaaaaatttggaaaggtcttatccgcgaaatttttt
tgaacACTACTCAAATAATGACAGATGATTTCTTTTAAATGTTAACTTGC
ATAAAAaagcgctaataatgtgtattttgaCAACTagcaaaatcatgaaa
atattgaCTCCTAATaatgccatccgcgaaattaagccccgcgaaaatta
atcccattaatATAGCTGGATGTAGCCCCACgaacgaaaattaaaaaaaa
gtgacgATTTAAAGGTGTCACAAACAGCACGAAAAGTCCAAAAGTTTGTC
GattctcataaaaaagacaTTTTCTACAAAATTGAGTCTGGTCACACTCT
TCTGATTTCCCTTCTtatatatgatttttttttacttttaagtgTTATAA
ACTCGTCGTTAAAGCAGCAAAAAGTAGTTAAAAAGTTGCTTAAAGGTGAA
GTACGCACTCCAGATTGATCCAGAAGTTCCGAAAATTGTGAAGAAACGTC
CAAAAATGAACAATTATTTAAACTGACGTTATTTTTGGCCTTCTTCttac
cttttcttttcttttcattcaCGAAAGACAGTTCACCACTTCAAATGGGA
TCGAGCCGAACGAACAAATGTAACCTCGAAGAAACGTTTGTAGTCTCTTC
TTTATGGGTACAGAAAGTAAATCTTCAATCCAGAAGAAAGCTTAACAACA
AATACTTTATATATTTACTTCTACTGCTCTCGGTTGACATCGAAACCAAT
CCTGGACCATCGCCATGTCAAATTTGTTTCAAGACAGTCCGTCGCAACCA
GAAAAGATTCTAATGCACCTCCTGGGTTGATATAACTCACGTTTATTACA
CGAAAATCGACCGAAAACTGTTAGTAGTCTAGAGATGAAACTCACTGGGT
TTGTCCAACTTGCATCCATACAGAGCTTCCATTTCCCGACATCTCAGACC
AAGATTTACTCGACCTTCAACTCGATCGTCCAGTCGAACAACGGAAGTTC
ATCCAAACAACGGACCAGATAATCTTCAACCAAAATCGTAAGCATACGTC
CATTGCAAATTTGAACACTCAATCTATCATGTCAACCTTCTCACAGTTTG
AATGTTATAAGTTTAATATTATCGCTGTTAGTGTTACCGAAACATGGATT
ACGAAcacaaaacaagaaaaagtcGTAAAGATAGACAATTATCTTTTCAT
ACCGAAAAATCGACTGAACGTAAAGGGAGTTGGAGTAGCTTTTTACATCC
GAGAAGAGCTTACCTATAAAAAGGAGACTCGGCATTGAGAGATACAACAT
GAAAAGTAAaaggtaaaaataaaaactctaTCACATTTCCAGCACCATCC
CGAACGAGCGTAAATGTCATCCCAGCGAAATAAGTGATCACGCTGGATCA
CGACCTCACTTATACTATTATGAACATTCGAAAACAAAGGTTCGAGCCAT
GGCACAAGATCATCCGAAACGAAAAGAATTTCTCACTTCGAGATTATGTG
AGGATTTTTCTCAGCTCCCTTTGAACATTATTTACAGTTTTTATGATCCC
GATGCTCAAGTCGATAAACGCTTTAACACGCTAATTACTAACTGCTTATC
CAGACACGCTCCAGAGAAACGAGTTAAGCTTACACGTCCCCTGCTCCGTG
GATGCAAGATCCTGATATTGTCCGATCTAGAAACTATTTAGAAGACCTTC
GAAAAAAGAAAAGTCGCCGAATCAGATGATGGATACCGAAAGGTCAGAAA
CAGTCACAAAAATAATGTTATTATCGCTCAGCCGGTCAGCGACTACATCA
CATCGCCCCTCGTTCACATCATTAACAACTCAATTAAAACCGGTATCTTC
CCGGACAAGTGTCTGCCCTATCCTGAAGGTGAGAAATCCTGCGGTTTCAA
AGGACTTTCGACCTGTTTCTATTCTACATTTACTAccaaaggatttaaaa
aaaatcattctcaTGCAGATCCTTGATCACATCGAGTCAGGAAGTCATCG
AAACCCCGTCAAATTCAAATATCGGAGAATGTTATATCCTTGGAAAGGGA
TCTCACGGAACTATCGAGATGGTACACCAATAATGGTCTAATATTCAAGG
ACGACGAACTTCAAATGATAGTATTTCACAAACCAAGACCCCTCCCTACT
GACCGATCCTACCTTGTTCGATCAAAAAATGGTCACTCTATTAAACAGGA
GTTAACGGTAAGTCTTTTGGGGGACATGATCGACCAAAACCTTACATGGA
TAGATCAAATTAATCACGTAACAAAATTTGCTCAGTCTTATCTTCAAGTG
TTGAAGCAATTTCAACGATTTACACCTTTCAACGTCAGGAAAACGCTGGC
AGNNNNgtactagtaatcgtatggtttggagtgcaattaacgattaatca
cgagtaacaaaggagaaaatagtaatttgcacgagtccgaaggacg
Run BLAST on NCBI

transcript from alignment at sc0005153:86..4031+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044201 ID=TCONS_00044201|Name=TCONS_00044201|organism=Clytia hemisphaerica|type=transcript|length=3946bp|location=Sequence derived from alignment at sc0005153:86..4031+ (Clytia hemisphaerica)
aaaaaatctgctggagtatttagttattcaaaagaccgtcGCATTCTCCC
AAACGACTAATCGCTCTAAGTGTGATATAATATATCATTTAGATGTCACT
GCTTACGATTGCTCGTTAATAATACATGGCCTCTAAAATCCCTTTTCTAG
CTAAATACAACGATAAAGTTTTATATATTACTATTTTGAAATTGGGGGAG
TTATGTATTATTACTTCAACCATCTTTTTGCGAAGAACCTTAGTATATTT
TAATATGTTCTTGTCTCACAAACATTTGTTTGTTATATATAGTCATTAAA
AGTGTTTCCATCTTTTAGGGAGTCGACGTCGACGATTAAACAATGTGTGA
TGCTACGGCGGTAAACTTAAAGTTGTTGGAAACTTGGTGTCACCATAGCA
ACTGAAAACAATCAGATAATTTGTAAACgaatgaaatcaattttaagcaa
aGCGAAAGTTGGACCACGATTGGTTATTCAAGATTCAACTATCAAGAAAG
GAATTTTAAATCATTCCCCTATGGAAAATAGAGCTTAATTTCGAAAAGAG
TCATCTACTTGACATTGGGTAAACAGCCCCTTGTCTGGGGCACCCAAGGG
TCACCCTTTAGTGAAGTTGTGCTTCGAAACATACAATTCTCAACTTTGAT
CTTTCAGACTTTTTTACCGTTGTTCTTAATCCAGAGCGCTGGATTTTATT
TTTCCGGTTGTTGGTTGGTTGTACTGGATATAGTGTTATCACTGGTTCTT
AGTAGTATGAAAACTTGTTCTATCGAATGAAGTATTTTGTTCATTTGATC
CAATGGGAATTTTGGGCAAGAAAAGGAGTTATGAAGTTTACGAATTTTGC
AAAGAATCCATATTTTGTACGGGGTCCAGCTTCTGCACTTCACCAAGTGA
TACAGACAACTTATTGTTAACTTATTTTATATTGGCCGAAACGGCAGCCA
GCTCTAACATCCCGACGAACGACATTGGCGGACACTCGCCCGCACCGTCC
CTTCCTGCTTCACAATCTGTTTTTGATTGTACACCGAACTGTGCGCTGAT
TTGGATAATTCTGGcgtttaaagcttttttttgtTTCCATTGCCATTATT
CTCTTAAGTCACAACTTACGGTCTCCCAAATCCTTTGGTGAGAATGGTGA
ATGAAATGTTTTGCTCCTATCTCCAGTGGCAAACATTTCGAAAACTATCC
TGCATCATTGCACTGGTCTACTAAAATTCATATTCTCATCCAAATTCGTC
TTTTTGAATTCATCAAAGTTGCTATATGGTGAGTTGGGTCAGCTTCAACC
ATCATATAACTTGAAAGGAAATATTTCTAACAAAATCAAATGTTGACTTC
AATCTTATTTCAGTATAATTGTCTTATATTGGTTTTCGGCTTCCAAAGGG
CACTTTCTGATTTCACGTTTTGTTTTGATAGACAGCCTTTTTTGCGAATa
cttactttaatgggataaatttcgcagattttgcggatttgggtgtcatc
cgcgaaatcccaatgaaaaatttggaaaggtcttatccgcgaaatttttt
tgaacACTACTCAAATAATGACAGATGATTTCTTTTAAATGTTAACTTGC
ATAAAAaagcgctaataatgtgtattttgaCAACTagcaaaatcatgaaa
atattgaCTCCTAATaatgccatccgcgaaattaagccccgcgaaaatta
atcccattaatATAGCTGGATGTAGCCCCACgaacgaaaattaaaaaaaa
gtgacgATTTAAAGGTGTCACAAACAGCACGAAAAGTCCAAAAGTTTGTC
GattctcataaaaaagacaTTTTCTACAAAATTGAGTCTGGTCACACTCT
TCTGATTTCCCTTCTtatatatgatttttttttacttttaagtgTTATAA
ACTCGTCGTTAAAGCAGCAAAAAGTAGTTAAAAAGTTGCTTAAAGGTGAA
GTACGCACTCCAGATTGATCCAGAAGTTCCGAAAATTGTGAAGAAACGTC
CAAAAATGAACAATTATTTAAACTGACGTTATTTTTGGCCTTCTTCttac
cttttcttttcttttcattcaCGAAAGACAGTTCACCACTTCAAATGGGA
TCGAGCCGAACGAACAAATGTAACCTCGAAGAAACGTTTGTAGTCTCTTC
TTTATGGGTACAGAAAGTAAATCTTCAATCCAGAAGAAAGCTTAACAACA
AATACTTTATATATTTACTTCTACTGCTCTCGGTTGACATCGAAACCAAT
CCTGGACCATCGCCATGTCAAATTTGTTTCAAGACAGTCCGTCGCAACCA
GAAAAGATTCTAATGCACCTCCTGGGTTGATATAACTCACGTTTATTACA
CGAAAATCGACCGAAAACTGTTAGTAGTCTAGAGATGAAACTCACTGGGT
TTGTCCAACTTGCATCCATACAGAGCTTCCATTTCCCGACATCTCAGACC
AAGATTTACTCGACCTTCAACTCGATCGTCCAGTCGAACAACGGAAGTTC
ATCCAAACAACGGACCAGATAATCTTCAACCAAAATCGTAAGCATACGTC
CATTGCAAATTTGAACACTCAATCTATCATGTCAACCTTCTCACAGTTTG
AATGTTATAAGTTTAATATTATCGCTGTTAGTGTTACCGAAACATGGATT
ACGAAcacaaaacaagaaaaagtcGTAAAGATAGACAATTATCTTTTCAT
ACCGAAAAATCGACTGAACGTAAAGGGAGTTGGAGTAGCTTTTTACATCC
GAGAAGAGCTTACCTATAAAAAGGAGACTCGGCATTGAGAGATACAACAT
GAAAAGTAAaaggtaaaaataaaaactctaTCACATTTCCAGCACCATCC
CGAACGAGCGTAAATGTCATCCCAGCGAAATAAGTGATCACGCTGGATCA
CGACCTCACTTATACTATTATGAACATTCGAAAACAAAGGTTCGAGCCAT
GGCACAAGATCATCCGAAACGAAAAGAATTTCTCACTTCGAGATTATGTG
AGGATTTTTCTCAGCTCCCTTTGAACATTATTTACAGTTTTTATGATCCC
GATGCTCAAGTCGATAAACGCTTTAACACGCTAATTACTAACTGCTTATC
CAGACACGCTCCAGAGAAACGAGTTAAGCTTACACGTCCCCTGCTCCGTG
GATGCAAGATCCTGATATTGTCCGATCTAGAAACTATTTAGAAGACCTTC
GAAAAAAGAAAAGTCGCCGAATCAGATGATGGATACCGAAAGGTCAGAAA
CAGTCACAAAAATAATGTTATTATCGCTCAGCCGGTCAGCGACTACATCA
CATCGCCCCTCGTTCACATCATTAACAACTCAATTAAAACCGGTATCTTC
CCGGACAAGTGTCTGCCCTATCCTGAAGGTGAGAAATCCTGCGGTTTCAA
AGGACTTTCGACCTGTTTCTATTCTACATTTACTAccaaaggatttaaaa
aaaatcattctcaTGCAGATCCTTGATCACATCGAGTCAGGAAGTCATCG
AAACCCCGTCAAATTCAAATATCGGAGAATGTTATATCCTTGGAAAGGGA
TCTCACGGAACTATCGAGATGGTACACCAATAATGGTCTAATATTCAAGG
ACGACGAACTTCAAATGATAGTATTTCACAAACCAAGACCCCTCCCTACT
GACCGATCCTACCTTGTTCGATCAAAAAATGGTCACTCTATTAAACAGGA
GTTAACGGTAAGTCTTTTGGGGGACATGATCGACCAAAACCTTACATGGA
TAGATCAAATTAATCACGTAACAAAATTTGCTCAGTCTTATCTTCAAGTG
TTGAAGCAATTTCAACGATTTACACCTTTCAACGTCAGGAAAACGCTGGC
AGNNNNgtactagtaatcgtatggtttggagtgcaattaacgattaatca
cgagtaacaaaggagaaaatagtaatttgcacgagtccgaaggacg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027847XLOC_027847Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044201-exon-sc0005153-1491911889:86..4031TCONS_00044201-exon-sc0005153-1491911889:86..4031Clytia hemisphaericaexon
TCONS_00044201-exon-sc0005153-1510915933:86..4031TCONS_00044201-exon-sc0005153-1510915933:86..4031Clytia hemisphaericaexon
TCONS_00044201-exon-sc0005153-1575043694:86..4031TCONS_00044201-exon-sc0005153-1575043694:86..4031Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005153supercontigsc0005153:86..4031 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0659554	0.254945	0.288012	0.559382	0.616133	0.201303	0.573538	0.567227	0.216019	0.56781	0.610615	0.197592	0.43655	0.850365	0.102531	0.282439	0.14069	0.0893124	0.842131	0.254059	0	0.188462	0	0	0	0.610689	0.390844	0.398663	0	0.0404444
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044201 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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