TCONS_00044281 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044281
Unique NameTCONS_00044281
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length371

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044281 ID=TCONS_00044281|Name=TCONS_00044281|organism=Clytia hemisphaerica|type=transcript|length=371bp
GTAGCGGGTAGTAACTGCTTGTTCCTGAATCGCGCATATGGTGGCTTCTG
TTGCGCGTTTCAGGGTTGACGATCGTATCCAGTCTGTTGTTAGGGTTTTG
TCAACGTGTGGTTCGTCAAGCAGCTGGAAGTATTGTCCATGGAGGTTCTT
GGCTTTCAAGATTTCAGTTCTTGTTTCAATTCGTTTTATCTTGATTTTGC
TTTTTCGTTGGCTTTTTGAAAGGATGGAAAGCTGCTGTATTTCGAGAGAG
ATTTCTTGGCTGTGTGACTGGGCCATAGCGTGANTATGAATCCTTCCTCA
GGCAGGCtctcaaacaaaaagaaattttgcgtGATATGGGGTACTGTTAG
ATAAACTTCCCccattcactt
Run BLAST on NCBI

transcript from alignment at sc0005291:1122..1492

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044281 ID=TCONS_00044281|Name=TCONS_00044281|organism=Clytia hemisphaerica|type=transcript|length=371bp|location=Sequence derived from alignment at sc0005291:1122..1492 (Clytia hemisphaerica)
aagtgaatggGGGAAGTTTATCTAACAGTACCCCATATCacgcaaaattt
ctttttgtttgagaGCCTGCCTGAGGAAGGATTCATANTCACGCTATGGC
CCAGTCACACAGCCAAGAAATCTCTCTCGAAATACAGCAGCTTTCCATCC
TTTCAAAAAGCCAACGAAAAAGCAAAATCAAGATAAAACGAATTGAAACA
AGAACTGAAATCTTGAAAGCCAAGAACCTCCATGGACAATACTTCCAGCT
GCTTGACGAACCACACGTTGACAAAACCCTAACAACAGACTGGATACGAT
CGTCAACCCTGAAACGCGCAACAGAAGCCACCATATGCGCGATTCAGGAA
CAAGCAGTTACTACCCGCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027917XLOC_027917Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044281-exon-sc0005291-1491911889:1122..1492TCONS_00044281-exon-sc0005291-1491911889:1122..1492Clytia hemisphaericaexon
TCONS_00044281-exon-sc0005291-1510915933:1122..1492TCONS_00044281-exon-sc0005291-1510915933:1122..1492Clytia hemisphaericaexon
TCONS_00044281-exon-sc0005291-1575043694:1122..1492TCONS_00044281-exon-sc0005291-1575043694:1122..1492Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005291supercontigsc0005291:1122..1492 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.218998	0.213558	0	0	0.885995	0	0	0	0	0.457179	0.443749	0.145852	0.436947	0.151258	0.373064	0	0	0.252647	0	0	0	0	0	0	5.3918	2.09847	0	0.320478	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044281 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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