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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044307 ID=TCONS_00044307|Name=TCONS_00044307|organism=Clytia hemisphaerica|type=transcript|length=1453bp
cgaaagtattacaataggCATGGTGCGGCGATATCggaagaaaatttaga
aaacgaaagtactccatacggtggacgaacttacTAAATTTAACTTACAC
TTTATTTACACGTTCGTTTagccacggacgattttcgcgctTTTATAGTG
GTCCGATAACTGTGGAGGTAATAAATTATATCAAGCCTTTTTGACGACTG
TATTATTAGCTCCACAGTTTGGAGCGTACGGCTCCCTAACTTTCTAGGAG
GGAACCTAGTGCTAGAAACTTTTTGGTACATATGAAGGTACTTCCTAAAC
TCAAATCTCCTCATCAAGATTCAAGAAGAATATAATCAAGGTGatatgaa
tttcaaaaaattgggtATCACAGGACAGTCCCCGTACATTGAAGAGTTTT
CTAAGGTAATTGAAATAGGAGACAGCACTTGTGTactgaatttcaatatt
tttgaaggCTATTTTGAGACTGGTAATATTTCTGTAAATTTTGTTCAAGA
GGAACTATTGTTGCAACATTCTGGTGCAGTTTTAGTGATAGCTGGAAATT
GCTTAGCTGTAATGCATTACaacaaaaagtactttttttttgactcacAT
AGTAGAGACTCTGAAGGCCATCAAGTTGAAGGCAGTATTGGAACttctgt
tcttttaaaatttgacaatTTGCAAGAAATTAAACAGTATGTAAGATCTG
AGTATAAGAACACAAATCTTTTTAACATCATTTATCTCAAAACTGATTTC
GATAATCaggaaaatataaaatatataatttcaGGGCAAGCCTTGCGTAG
acggaaaaatatttcacaCAAGAGATCAGTTGAGAAGATGAAAAGTACTG
AACAATATAAAGATTTATTGCAAAAACAAAGCATTGCTAACAAAAGGTCA
CGTGAAAAGATCCAAGGCACTGATAAGCATGAGcaagaaaaagaattaaa
acGTAAGCGTCGGGAATTAAATAGAGGCACAGAAAACCATGagcaagaaa
aagagaaaaagcgTAAGGCTAAAAAATCTGCTTATATTAAGAACAAAAAG
CTCAAGTCGGGAAAAAGAGTTGATaatttcaggcaaaaaaaaattgaggg
tCCATCTTACATTTGTGTAACGTGCAATCGCAGCATGTTCAAGAGATCtg
taataatttttgatgagcaaaagtattcaaaaatcaactttgaagaaata
gaaaattttaatcctgTAACTACTTTCGACGGTAATTTCTATGTATGCAC
AACTTGTCATCGAAAACTAATAAAAGGTGAAATCCCATGTCAATCTGTGT
CTAACAAACTCCAAATTTTTGATCTCCCAGATCATCTAAGTGATAtaaga
aaacttgaaagaaTTTTAGTGGCCCAAAGAATTTTATTCTCAAAAGTCAG
GATTATGCATAAAGGTGAATTCCCTAAATTACAAGGTGCAATATGCAATG
TTC Run BLAST on NCBI protein sequence of TCONS_00044307-protein >TCONS_00044307-protein ID=TCONS_00044307-protein|Name=TCONS_00044307-protein|organism=Clytia hemisphaerica|type=polypeptide|length=369bp
MNFKKLGITGQSPYIEEFSKVIEIGDSTCVLNFNIFEGYFETGNISVNFV
QEELLLQHSGAVLVIAGNCLAVMHYNKKYFFFDSHSRDSEGHQVEGSIGT
SVLLKFDNLQEIKQYVRSEYKNTNLFNIIYLKTDFDNQENIKYIISGQAL
RRRKNISHKRSVEKMKSTEQYKDLLQKQSIANKRSREKIQGTDKHEQEKE
LKRKRRELNRGTENHEQEKEKKRKAKKSAYIKNKKLKSGKRVDNFRQKKI
EGPSYICVTCNRSMFKRSVIIFDEQKYSKINFEEIENFNPVTTFDGNFYV
CTTCHRKLIKGEIPCQSVSNKLQIFDLPDHLSDIRKLERILVAQRILFSK
VRIMHKGEFPKLQGAICNV Run BLAST on NCBI transcript from alignment at sc0005339:28..2469- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044307 ID=TCONS_00044307|Name=TCONS_00044307|organism=Clytia hemisphaerica|type=transcript|length=2442bp|location=Sequence derived from alignment at sc0005339:28..2469- (Clytia hemisphaerica)
CGAAAGTATTACAATAGGCATGGTGCGGCGATATCGGAAGAAAATTTAGA
AAACGAAAGTACTCCATACGGTGGACGAACTTACTAAATTTAACTTACAC
TTTATTTACACGTTCGTTTAGCCACGGACGATTTTCGCGCTTTTATAGTG
GTCCGATAACTGTGGAGGTAATAAATTATATCAAGCCTTTTTGACGACTG
TATTATTAGCTCCACAGTTTGGAGCGTACGGCTCCCTAACTTTCTAGGAG
GGAACCTAGTGCTAGAAACTTTTTGGTACATATGAAGGTACTTCCTAAAC
TCAAATCTCCTCATCAAGATTCAAGAAGAATATAGTAAGTATAAATCATC
CTATCTTTCAACTTTGCTTTTTCAGTTCCACGTGGACTTATTTTTCAAGT
GGATCTGTTTAAAGCAACTTTTTTTGTCCCTTCACATAGTGATTGTGGGC
ATCTTTTTTTTGTTTTGTTTTTGCCCTTCAAATTTACGCCGTTGAGCTAC
TGAATTTGATTGAGGCTCTTGCCCTTCAAATTTACGCTTTTGAGCTACTG
AATTTGATTGAGGCTTTTTTGTCCTTCAGAGCACGCCATTGAGCTACTGA
CTCTGATTGAGGCACCCCGTGGCCAGGGCAGCTTAAAGACTGTGCCTGCG
ACCGATTGAGCTTGCATTGTCAGCTCCAAAAGCATTCATAACTGCATTGC
CAGTTCAAATACACAAAGCTGCACTGTCAGCTCTAAATATATTCTTGAAA
ATATTATATTATAGTTGATTAGATACTTTTTAACAAAGCTGAGTAGTTTT
GTTCTCTGAAAGATGATTTCAATTGCATTGTATCGTGCACGTATAGGAAG
CTTTGCTTTTACAGCTCAGAGAAATGTGAAATGTATCGCTAAATCTATTG
TCGTTGGTTCTGACCTTTCAAATAACAGGCTTTTAAAACTATTGAGACCT
GCTCGTTTCGTAGCACTTTTTACCCTCCTATGTTTTGCAATCCCAAAATC
GTTTGAACCAACAGAGCTTTACACGCCTCTAGATTTTCTTAATTTTTCAA
GAAATGGAATTTTTGTCCAATATCCCAAAGCAGTGTATAATTTGGGAGAT
CCAAACCTTATTTTTCTAAAGGTGAACTACACACTTCTTTTATCAGGCGA
TGTAGAACTTAACCCAGGTCCAAGTGTTGTTCAAGGTTCTTTTCATCAGG
GTCACCGTAAATTTGGTGAGACTGCGGGTATACAATGTTCGTCAAATTGT
TTTTTTGCTATTTGCTATGCTCAGTTCAGAAAATTATCGCTATGGAAGAC
TCATGATTTGGATTATGTTTTAGATCAAGGTGATATGAATTTCAAAAAAT
TGGGTATCACAGGACAGTCCCCGTACATTGAAGAGTTTTCTAAGGTAATT
GAAATAGGAGACAGCACTTGTGTACTGAATTTCAATATTTTTGAAGGCTA
TTTTGAGACTGGTAATATTTCTGTAAATTTTGTTCAAGAGGAACTATTGT
TGCAACATTCTGGTGCAGTTTTAGTGATAGCTGGAAATTGCTTAGCTGTA
ATGCATTACAACAAAAAGTACTTTTTTTTTGACTCACATAGTAGAGACTC
TGAAGGCCATCAAGTTGAAGGCAGTATTGGAACTTCTGTTCTTTTAAAAT
TTGACAATTTGCAAGAAATTAAACAGTATGTAAGATCTGAGTATAAGAAC
ACAAATCTTTTTAACATCATTTATCTCAAAACTGATTTCGATAATCAGGA
AAATATAAAATATATAATTTCAGGGCAAGCCTTGCGTAGACGGAAAAATA
TTTCACACAAGAGATCAGTTGAGAAGATGAAAAGTACTGAACAATATAAA
GATTTATTGCAAAAACAAAGCATTGCTAACAAAAGGTCACGTGAAAAGAT
CCAAGGCACTGATAAGCATGAGCAAGAAAAAGAATTAAAACGTAAGCGTC
GGGAATTAAATAGAGGCACAGAAAACCATGAGCAAGAAAAAGAGAAAAAG
CGTAAGGCTAAAAAATCTGCTTATATTAAGAACAAAAAGCTCAAGTCGGG
AAAAAGAGTTGATAATTTCAGGCAAAAAAAAATTGAGGGTCCATCTTACA
TTTGTGTAACGTGCAATCGCAGCATGTTCAAGAGATCTGTAATAATTTTT
GATGAGCAAAAGTATTCAAAAATCAACTTTGAAGAAATAGAAAATTTTAA
TCCTGTAACTACTTTCGACGGTAATTTCTATGTATGCACAACTTGTCATC
GAAAACTAATAAAAGGTGAAATCCCATGTCAATCTGTGTCTAACAAACTC
CAAATTTTTGATCTCCCAGATCATCTAAGTGATATAAGAAAACTTGAAAG
AATTTTAGTGGCCCAAAGAATTTTATTCTCAAAAGTCAGGATTATGCATA
AAGGTGAATTCCCTAAATTACAAGGTGCAATATGCAATGTTC Coding sequence (CDS) from alignment at sc0005339:28..2469- >TCONS_00044307 ID=TCONS_00044307|Name=TCONS_00044307|organism=Clytia hemisphaerica|type=CDS|length=1107bp|location=Sequence derived from alignment at sc0005339:28..2469- (Clytia hemisphaerica)
ATGAATTTCAAAAAATTGGGTATCACAGGACAGTCCCCGTACATTGAAGA
GTTTTCTAAGGTAATTGAAATAGGAGACAGCACTTGTGTACTGAATTTCA
ATATTTTTGAAGGCTATTTTGAGACTGGTAATATTTCTGTAAATTTTGTT
CAAGAGGAACTATTGTTGCAACATTCTGGTGCAGTTTTAGTGATAGCTGG
AAATTGCTTAGCTGTAATGCATTACAACAAAAAGTACTTTTTTTTTGACT
CACATAGTAGAGACTCTGAAGGCCATCAAGTTGAAGGCAGTATTGGAACT
TCTGTTCTTTTAAAATTTGACAATTTGCAAGAAATTAAACAGTATGTAAG
ATCTGAGTATAAGAACACAAATCTTTTTAACATCATTTATCTCAAAACTG
ATTTCGATAATCAGGAAAATATAAAATATATAATTTCAGGGCAAGCCTTG
CGTAGACGGAAAAATATTTCACACAAGAGATCAGTTGAGAAGATGAAAAG
TACTGAACAATATAAAGATTTATTGCAAAAACAAAGCATTGCTAACAAAA
GGTCACGTGAAAAGATCCAAGGCACTGATAAGCATGAGCAAGAAAAAGAA
TTAAAACGTAAGCGTCGGGAATTAAATAGAGGCACAGAAAACCATGAGCA
AGAAAAAGAGAAAAAGCGTAAGGCTAAAAAATCTGCTTATATTAAGAACA
AAAAGCTCAAGTCGGGAAAAAGAGTTGATAATTTCAGGCAAAAAAAAATT
GAGGGTCCATCTTACATTTGTGTAACGTGCAATCGCAGCATGTTCAAGAG
ATCTGTAATAATTTTTGATGAGCAAAAGTATTCAAAAATCAACTTTGAAG
AAATAGAAAATTTTAATCCTGTAACTACTTTCGACGGTAATTTCTATGTA
TGCACAACTTGTCATCGAAAACTAATAAAAGGTGAAATCCCATGTCAATC
TGTGTCTAACAAACTCCAAATTTTTGATCTCCCAGATCATCTAAGTGATA
TAAGAAAACTTGAAAGAATTTTAGTGGCCCAAAGAATTTTATTCTCAAAA
GTCAGGATTATGCATAAAGGTGAATTCCCTAAATTACAAGGTGCAATATG
CAATGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044307-exon-sc0005339-1575043694:2136..2469 | TCONS_00044307-exon-sc0005339-1575043694:2136..2469 | Clytia hemisphaerica | exon |
| TCONS_00044307-exon-sc0005339-1575043694:28..1146 | TCONS_00044307-exon-sc0005339-1575043694:28..1146 | Clytia hemisphaerica | exon |
| TCONS_00044307-exon-sc0005339-1510915933:2136..2469 | TCONS_00044307-exon-sc0005339-1510915933:2136..2469 | Clytia hemisphaerica | exon |
| TCONS_00044307-exon-sc0005339-1510915933:28..1146 | TCONS_00044307-exon-sc0005339-1510915933:28..1146 | Clytia hemisphaerica | exon |
| TCONS_00044307-exon-sc0005339-1491911889:2136..2469 | TCONS_00044307-exon-sc0005339-1491911889:2136..2469 | Clytia hemisphaerica | exon |
| TCONS_00044307-exon-sc0005339-1491911889:28..1146 | TCONS_00044307-exon-sc0005339-1491911889:28..1146 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005339 | supercontig | sc0005339:28..2469 - |
Blast
The following BLAST results are available for this feature:
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