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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044380 ID=TCONS_00044380|Name=TCONS_00044380|organism=Clytia hemisphaerica|type=transcript|length=817bp
aaaaaaatgaggtTGCAAAAAAGTCGATAACACAAGAAAAATTACAGATG
TATGAAGAAAACTATTCCTTGTTTAAGATGTTATGTTTGAAGGACTGAAT
GTCATTGAAAGATTTGTATGTTTTGGACTTCAAACGTGCTACACAATTGC
AATTAATATCCGCAAAAACAAAACCAACTGGCCCACCATCCACAATCAAT
GCCCTTGCCTGGTCTAAGAGGTCCAACCTTGCCTTAGTGATATCAAGCcg
gattttgattttttggttaGGAAGACCCTTTCTGGCTTTGTACAAGGCTG
TACGTTTTCCAAACGAATGAAACTTTACAATCATAGACTGTTTTTCCCTA
CCAACACGATGAGCTCTGTCTATATCAGTAGAGGAAATGTCTAAGTTTAA
TTCATTGCAGATTTCAACAACTTTCTCCACACATTTTGGAGCAGACTCGT
AGGCCATTTTTTCAATTCCGTTAATCCTAAGACAATATCTCCTTGAATAC
TGTTCATGGCTGTCACTTTGTCTGGTGAGAAAAACAACTGAACTTGATAG
GACTGTATTTTTATCACATAAATGATTGACTGTGGTTTTTAGTTCGGATA
TCGTGCtttctaactgaaaaattctttcttcgtGATGCATACTGTCTTCT
TCGAGAGAGGTGATTCTTTTTTCTTGTGCGTCAAGACGTTCGTGTAGCTT
GGTGAATAAAGTTTTAATATCATTAATGTCCTCTTTTGTTGCCAGTTTCT
TTCCAAACTCGAGCAATTTTTGTTCCAGGATCTCCTCTTGTTTGGCAGCT
TCAGAGGAATTTCTGAG Run BLAST on NCBI protein sequence of TCONS_00044380-protein >TCONS_00044380-protein ID=TCONS_00044380-protein|Name=TCONS_00044380-protein|organism=Clytia hemisphaerica|type=polypeptide|length=251bp
LRNSSEAAKQEEILEQKLLEFGKKLATKEDINDIKTLFTKLHERLDAQEK
RITSLEEDSMHHEERIFQLESTISELKTTVNHLCDKNTVLSSSVVFLTRQ
SDSHEQYSRRYCLRINGIEKMAYESAPKCVEKVVEICNELNLDISSTDID
RAHRVGREKQSMIVKFHSFGKRTALYKARKGLPNQKIKIRLDITKARLDL
LDQARALIVDGGPVGFVFADINCNCVARLKSKTYKSFNDIQSFKHNILNK
E Run BLAST on NCBI transcript from alignment at sc0005486:3410..4226 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044380 ID=TCONS_00044380|Name=TCONS_00044380|organism=Clytia hemisphaerica|type=transcript|length=817bp|location=Sequence derived from alignment at sc0005486:3410..4226 (Clytia hemisphaerica)
CTCAGAAATTCCTCTGAAGCTGCCAAACAAGAGGAGATCCTGGAACAAAA
ATTGCTCGAGTTTGGAAAGAAACTGGCAACAAAAGAGGACATTAATGATA
TTAAAACTTTATTCACCAAGCTACACGAACGTCTTGACGCACAAGAAAAA
AGAATCACCTCTCTCGAAGAAGACAGTATGCATCacgaagaaagaatttt
tcagttagaaaGCACGATATCCGAACTAAAAACCACAGTCAATCATTTAT
GTGATAAAAATACAGTCCTATCAAGTTCAGTTGTTTTTCTCACCAGACAA
AGTGACAGCCATGAACAGTATTCAAGGAGATATTGTCTTAGGATTAACGG
AATTGAAAAAATGGCCTACGAGTCTGCTCCAAAATGTGTGGAGAAAGTTG
TTGAAATCTGCAATGAATTAAACTTAGACATTTCCTCTACTGATATAGAC
AGAGCTCATCGTGTTGGTAGGGAAAAACAGTCTATGATTGTAAAGTTTCA
TTCGTTTGGAAAACGTACAGCCTTGTACAAAGCCAGAAAGGGTCTTCCta
accaaaaaatcaaaatccgGCTTGATATCACTAAGGCAAGGTTGGACCTC
TTAGACCAGGCAAGGGCATTGATTGTGGATGGTGGGCCAGTTGGTTTTGT
TTTTGCGGATATTAATTGCAATTGTGTAGCACGTTTGAAGTCCAAAACAT
ACAAATCTTTCAATGACATTCAGTCCTTCAAACATAACATCTTAAACAAG
GAATAGTTTTCTTCATACATCTGTAATTTTTCTTGTGTTATCGACTTTTT
TGCAacctcattttttt Coding sequence (CDS) from alignment at sc0005486:3410..4226 >TCONS_00044380 ID=TCONS_00044380|Name=TCONS_00044380|organism=Clytia hemisphaerica|type=CDS|length=756bp|location=Sequence derived from alignment at sc0005486:3410..4226 (Clytia hemisphaerica)
CTCAGAAATTCCTCTGAAGCTGCCAAACAAGAGGAGATCCTGGAACAAAA
ATTGCTCGAGTTTGGAAAGAAACTGGCAACAAAAGAGGACATTAATGATA
TTAAAACTTTATTCACCAAGCTACACGAACGTCTTGACGCACAAGAAAAA
AGAATCACCTCTCTCGAAGAAGACAGTATGCATCacgaagaaagaatttt
tcagttagaaaGCACGATATCCGAACTAAAAACCACAGTCAATCATTTAT
GTGATAAAAATACAGTCCTATCAAGTTCAGTTGTTTTTCTCACCAGACAA
AGTGACAGCCATGAACAGTATTCAAGGAGATATTGTCTTAGGATTAACGG
AATTGAAAAAATGGCCTACGAGTCTGCTCCAAAATGTGTGGAGAAAGTTG
TTGAAATCTGCAATGAATTAAACTTAGACATTTCCTCTACTGATATAGAC
AGAGCTCATCGTGTTGGTAGGGAAAAACAGTCTATGATTGTAAAGTTTCA
TTCGTTTGGAAAACGTACAGCCTTGTACAAAGCCAGAAAGGGTCTTCCta
accaaaaaatcaaaatccgGCTTGATATCACTAAGGCAAGGTTGGACCTC
TTAGACCAGGCAAGGGCATTGATTGTGGATGGTGGGCCAGTTGGTTTTGT
TTTTGCGGATATTAATTGCAATTGTGTAGCACGTTTGAAGTCCAAAACAT
ACAAATCTTTCAATGACATTCAGTCCTTCAAACATAACATCTTAAACAAG
GAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044380-exon-sc0005486-1491911889:3410..4226 | TCONS_00044380-exon-sc0005486-1491911889:3410..4226 | Clytia hemisphaerica | exon |
| TCONS_00044380-exon-sc0005486-1510915933:3410..4226 | TCONS_00044380-exon-sc0005486-1510915933:3410..4226 | Clytia hemisphaerica | exon |
| TCONS_00044380-exon-sc0005486-1575043694:3410..4226 | TCONS_00044380-exon-sc0005486-1575043694:3410..4226 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005486 | supercontig | sc0005486:3410..4226 . |
Blast
The following BLAST results are available for this feature:
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