TCONS_00044414 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00044414
Unique Name	TCONS_00044414
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	383

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0005534:4443..7053+

transcript sequence

>TCONS_00044414 ID=TCONS_00044414|Name=TCONS_00044414|organism=Clytia hemisphaerica|type=transcript|length=383bp
TCAGGTGTTTGGGTTCAGGGTGATATGGCAAATTATACGGTAGCGAAACG
TGAAGCATTCACATTGAAACTGAGTAATGGTTACACGATTAATTCAATGC
CGTTACCTGGAGGTGGACCTATCGTTGGAATGATACATAATATTATAAGC
GGTTATGAACATCATCAAGGACCTGCAAACTGGAGTCAAGATCCGTCAAA
ATAAGATCCGTTTGAACGAAACACACAACAGCTCATATTACGGTGGATTT
TGGGGCAAAGATGATTTTGGAACGTCGCACACCTCTATTCTGACCAAAGA
AGGTGACGCCATTGCCACTACTAACACTATCAATACATAGTAAGTATTAT
TGCTtgggtaccttaagggaacttattttggcg

Run BLAST on NCBI

transcript from alignment at sc0005534:4443..7053+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00044414 ID=TCONS_00044414|Name=TCONS_00044414|organism=Clytia hemisphaerica|type=transcript|length=2611bp|location=Sequence derived from alignment at sc0005534:4443..7053+ (Clytia hemisphaerica)
TCAGGTGTTTGGGTTCAGGGTGATATGGCAAATTATACGGTAGCGAAACG
TGAAGCATTCACATTGAAACTGAGTAATGGTTACACGATTAATTCAATGC
CGTTACCTGGAGGTGGACCTATCGTTGGAATGATACATAATATTATAAGC
GGTGAGTGTAACCACTCTCTCGTGGCTCATCTTTTCTCGTCAAGGTGAAG
CGACAaatatggttttttgaagaaatttagaTACTGACTTTAATATAACC
AGTCTTTTTTACAAAGATTGCTtgagttttgattttcttgatgTTCCGCG
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACCACTTATAC
CAttggaaagctctcgaaaaacgaTATAGAGGACTTTTAAGCGGATATGG
TCGATTTCTCAACGTAACTCGAGAAAAAAGGTGCCAAAGTGACGTTTTCT
CAATGTTTGACGTTAATTTTCTCGAGGCCCGACAAAGGTTTCAAGTTTCT
CCGTAAAACCTTCAAATTCTAACCCTTATAATTCACGTAAAAAGCGGGCA
ATCATTAAATTATCTCTTCTTATTGTCAGGTTATGAACATCATCAAGGAC
CTGCAAACTGGAGTCAAGATCCGTCAAAATAAGATCCGTTTGAACGAAAC
ACACAACAGCTCATATTACGGTGGATTTTGGGGCAAAGATGATTTTGGAA
CGTCGCACACCTCTATTCTGACCAAAGAAGGTGACGCCATTGCCACTACT
AACACTATCAATACATAGTAAGTATTATTGCTtgggtaccttaagggaac
ttattttggcg

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_028046	XLOC_028046	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00044414-exon-sc0005534-1491911889:4443..4593	TCONS_00044414-exon-sc0005534-1491911889:4443..4593	Clytia hemisphaerica	exon
TCONS_00044414-exon-sc0005534-1510915933:4443..4593	TCONS_00044414-exon-sc0005534-1510915933:4443..4593	Clytia hemisphaerica	exon
TCONS_00044414-exon-sc0005534-1575043694:4443..4593	TCONS_00044414-exon-sc0005534-1575043694:4443..4593	Clytia hemisphaerica	exon
TCONS_00044414-exon-sc0005534-1491911889:6822..7053	TCONS_00044414-exon-sc0005534-1491911889:6822..7053	Clytia hemisphaerica	exon
TCONS_00044414-exon-sc0005534-1510915933:6822..7053	TCONS_00044414-exon-sc0005534-1510915933:6822..7053	Clytia hemisphaerica	exon
TCONS_00044414-exon-sc0005534-1575043694:6822..7053	TCONS_00044414-exon-sc0005534-1575043694:6822..7053	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0005534	supercontig	sc0005534:4443..7053 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.2921	10.9356	39.0154	48.786	35.7453	29.9847	38.5345	48.3461	38.4873	42.7778	56.3944	39.9231	48.5463	54.9223	29.1761	38.6411	62.6029	68.5587	65.457	65.3207	52.2414	57.4055	31.093	39.1077	100.7	97.2966	48.0879	49.5304	62.2346	57.1818

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00044414 vs. Swiss-Prot (Human)

BLAST of TCONS_00044414 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00044414 (transcript) - C. hemisphaerica