TCONS_00044440 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044440
Unique NameTCONS_00044440
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1144

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044440 ID=TCONS_00044440|Name=TCONS_00044440|organism=Clytia hemisphaerica|type=transcript|length=1144bp
AAAAGTTGTCAAGAGATGTGACCTcacattctattgcttttgtGCGATCT
CAATAGCTTGTGTTCACATCGTTTTTAGTTCATTAGAAACTTTTTCTTCA
GTCCTTAGTGATTTTTTGCAATTGATTGATTTACACATTTTTAGGTGGTG
ACATCCAACCAAAGAGAGACTTGGGACGTTTTGTCCTATGGCCAAAATAC
ATTAAATTGCAGAGGCAGAAGCGTATTTTGTACCAGCGTTTGAAGGTTCC
ACCAAGCATCAATCAATTTACTCAAACTTTGGATCAGCAAACAGCAACAc
aacttttcaaacttcttCACAAGTACAGACCAGAAACAAAAGCTGAGAAG
AAAGCCAGATTAACAGCTCAGGCCGAAAGCAAAGCTGCTGGTAAACAAGA
AACTGCTGGAAAGAAACCAATCAATGTTAAATGCGGTATCAACCACATCA
CAAACTTGGTTGAAGCCAAGAAAGCACAATTAGTTGTTATTGCTCATGAT
GTTGACCCAATTGAGGTATCTCTTTTGAAATGATACTGttaatttattta
ttgaatTGAATGGCTGCCCAATGATTAACTCCAATCCAACTCATATTCTC
CATGGTGAAACAACCTGAGCAGAATTTCTGAGGGCGTGTTTactgttttg
ttgattttctttgactAGTGTTCAATTAACATtgtcatagtgtgcagagg
ggtccagcccccagcatttttcagagggggctaaggaaaatagcccccAG
CTAAATTTTAGAAACATAGCCAccaccttcacaaagcaaaatatcaaata
aattttgcatgcaaattctcgataaatttatttcaagagggataaaacct
tcccccagcatagatttttaacataatttaaaatatcttcaacctatcag
ctctgcccccagttctattacacaacactcagTCTGGATTatcacttcgc
aacccttatacaatacgaggcctggaattcccgagttattttttccgagt
taaaaaaaccgagttaagaaaaaaccgagttatcccgagttatgacgtca
ttttcggaatttagtgacgtcatttttcattttataactcggtttatttt
gcttcctttaactttccgagttattttccattttttaactcggg
Run BLAST on NCBI

transcript from alignment at sc0005578:2952..4236-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044440 ID=TCONS_00044440|Name=TCONS_00044440|organism=Clytia hemisphaerica|type=transcript|length=1285bp|location=Sequence derived from alignment at sc0005578:2952..4236- (Clytia hemisphaerica)
AAAAGTTGTCAAGAGATGTGACCTCACATTCTATTGCTTTTGTGCGATCT
CAATAGCTTGTGTTCACATCGTTTTTAGTTCATTAGAAACTTTTTCTTCA
GTCCTTAGTGATTTTTTGCAATTGATTGATTTACACATTTTTAGGTGGTG
ACATCCAACCAAAGAGAGACTTGGGACGTTTTGTCCTATGGCCAAAATAC
ATTAAATTGCAGAGGCAGAAGCGTATTTTGTACCAGCGTTTGAAGGTTCC
ACCAAGCATCAATCAATTTACTCAAACTTTGGATCAGCAAACAGGTAAAT
CTTTGCTAAGTGATTATTTCAATGCTGTTTGCTGAAGGATTTAGCCATTT
GTAAAGGCGTGTAGTGCTGAAACCTATGGGAATCCTTGTATCTTATGAGA
ATGAGTTATTCAAAATATTGATTTTTGTGTTTCAGCAACACAACTTTTCA
AACTTCTTCACAAGTACAGACCAGAAACAAAAGCTGAGAAGAAAGCCAGA
TTAACAGCTCAGGCCGAAAGCAAAGCTGCTGGTAAACAAGAAACTGCTGG
AAAGAAACCAATCAATGTTAAATGCGGTATCAACCACATCACAAACTTGG
TTGAAGCCAAGAAAGCACAATTAGTTGTTATTGCTCATGATGTTGACCCA
ATTGAGGTATCTCTTTTGAAATGATACTGTTAATTTATTTATTGAATTGA
ATGGCTGCCCAATGATTAACTCCAATCCAACTCATATTCTCCATGGTGAA
ACAACCTGAGCAGAATTTCTGAGGGCGTGTTTACTGTTTTGTTGATTTTC
TTTGACTAGTGTTCAATTAACATTGTCATAGTGTGCAGAGGGGTCCAGCC
CCCAGCATTTTTCAGAGGGGGCTAAGGAAAATAGCCCCCAGCTAAATTTT
AGAAACATAGCCACCACCTTCACAAAGCAAAATATCAAATAAATTTTGCA
TGCAAATTCTCGATAAATTTATTTCAAGAGGGATAAAACCTTCCCCCAGC
ATAGATTTTTAACATAATTTAAAATATCTTCAACCTATCAGCTCTGCCCC
CAGTTCTATTACACAACACTCAGTCTGGATTATCACTTCGCAACCCTTAT
ACAATACGAGGCCTGGAATTCCCGAGTTATTTTTTCCGAGTTAAAAAAAC
CGAGTTAAGAAAAAACCGAGTTATCCCGAGTTATGACGTCATTTTCGGAA
TTTAGTGACGTCATTTTTCATTTTATAACTCGGTTTATTTTGCTTCCTTT
AACTTTCCGAGTTATTTTCCATTTTTTAACTCGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028072XLOC_028072Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044440-exon-sc0005578-1575043694:3943..4236TCONS_00044440-exon-sc0005578-1575043694:3943..4236Clytia hemisphaericaexon
TCONS_00044440-exon-sc0005578-1575043694:2952..3801TCONS_00044440-exon-sc0005578-1575043694:2952..3801Clytia hemisphaericaexon
TCONS_00044440-exon-sc0005578-1510915933:3943..4236TCONS_00044440-exon-sc0005578-1510915933:3943..4236Clytia hemisphaericaexon
TCONS_00044440-exon-sc0005578-1510915933:2952..3801TCONS_00044440-exon-sc0005578-1510915933:2952..3801Clytia hemisphaericaexon
TCONS_00044440-exon-sc0005578-1491911889:3943..4236TCONS_00044440-exon-sc0005578-1491911889:3943..4236Clytia hemisphaericaexon
TCONS_00044440-exon-sc0005578-1491911889:2952..3801TCONS_00044440-exon-sc0005578-1491911889:2952..3801Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005578supercontigsc0005578:2952..4236 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
716.963	742.853	784.101	750.049	790.456	599.363	995.791	1005.92	1436.43	1231.61	1401.39	1714.77	1822.36	1739.89	1704.94	1591.53	1691.56	1859.33	882.505	1021.93	1597.12	1538.15	1132.21	1107.47	1173.07	1281.47	1377.37	1323.42	917.902	955.463
Blast
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BLAST of TCONS_00044440 vs. Swiss-Prot (Human)
Match: RL7A (60S ribosomal protein L7a OS=Homo sapiens GN=RPL7A PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 7.553e-44
Identity = 90/129 (69.77%), Postives = 106/129 (82.17%), Query Frame = 3 
Query:  141 LGGDIQPKRDLGRFVLWPKYIKLQRQKRILYQRLKVPPSINXXXXXXXXXXXXXXXKLLHKYRPETKAEKKARLTAQAESKAAGKQETAGKKPINVKCGINHITNLVEAKKAQLVVIAHDVDPIEVSLL 527
            +G DIQPKRDL RFV WP+YI+LQRQ+ ILY+RLKVPP+INQFTQ LD+QTATQL KL HKYRPETK EKK RL A+AE KAAGK +   K+P  ++ G+N +T LVE KKAQLVVIAHDVDPIE+ + 
Sbjct:   41 IGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVF 169
The following BLAST results are available for this feature:
BLAST of TCONS_00044440 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL7A7.553e-4469.7760S ribosomal protein L7a OS=Homo sapiens GN=RPL7A... [more]
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