TCONS_00044441 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044441
Unique NameTCONS_00044441
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length924

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044441 ID=TCONS_00044441|Name=TCONS_00044441|organism=Clytia hemisphaerica|type=transcript|length=924bp
CTGGTTGATCCGATGCCTTGGGCAAGATTTGTTCCTTCGATTATGTCCGG
TCTGGAGGCATCTGCTACATACAATGTTTGATTCCTTTTTGAAAAGAGAA
TTATTGAAGTGAAATTGTCTCAGTctcattcaattttattttacgTCAAA
TACAGTCGCATCGCGAGAGCAGCAAAAAATGTGCACAATATGGCGGAAAT
AACTGGAAAAATATACGAACGAAAATCCGAGGAAATTGGTTATTGTACCC
CATCAAGCTGCCTCATCCATGCAAACACAAATAAAAAGGACACTTTACAA
TGCAAGAAATGCGAACGTCAAGTTCATTTGGCTTGCTCTGAGCTTCCTCC
TTATCAAATCCAGCTTTATCTTCAACACAAATCTAGAAGCTATCAATGCA
TGAGCTGTGTGATCATAACACcagaattgaaaaagaaattgaacttcAAG
TCTGTTGGagatttacaaaaagaaatCGACGCATGTGAGAACATAATAAA
AGCACAACGggaggaaatttcaaatttgaaggcTAAAGTGTCAACTAACA
ATGTGAATAAAGCAGTCGCAGAAAttgaaaacacaaaataaataaaatcg
cAAACAAGAAATCTTCGTCTGTGAATGAAATTGCTTGTGAAAAATNGGAa
ggcaaaataaataaaatcgcAAACAAGAAATCTTCGTCTGTGAATGAAAT
TGCTTGTGAAAAATCAAGTTATTCAGAAATAACAAAGAAACATCTTGAGT
CGCAAACGAAAACGATAAAGCgtttccttgaaaaagaaaataaggatAAA
AAATGGATTGAAGCGACTTCGTGTAATCTCATGATACATCATCTATATGA
AACTACGGAAGACACAAAAGAAATAGCGGATAAGAAAGATATCGACTACa
tagaaaaacatgtaatttcAAAAC
Run BLAST on NCBI

protein sequence of TCONS_00044441-protein

>TCONS_00044441-protein ID=TCONS_00044441-protein|Name=TCONS_00044441-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MAEITGKIYERKSEEIGYCTPSSCLIHANTNKKDTLQCKKCERQVHLACS
ELPPYQIQLYLQHKSRSYQCMSCVIITPELKKKLNFKSVGDLQKEIDACE
NIIKAQREEISNLKAKVSTNNVNKAVAEIENTK
Run BLAST on NCBI

transcript from alignment at sc0005581:40..963

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044441 ID=TCONS_00044441|Name=TCONS_00044441|organism=Clytia hemisphaerica|type=transcript|length=924bp|location=Sequence derived from alignment at sc0005581:40..963 (Clytia hemisphaerica)
GTTTTgaaattacatgtttttctatGTAGTCGATATCTTTCTTATCCGCT
ATTTCTTTTGTGTCTTCCGTAGTTTCATATAGATGATGTATCATGAGATT
ACACGAAGTCGCTTCAATCCATTTTTTatccttattttctttttcaagga
aacGCTTTATCGTTTTCGTTTGCGACTCAAGATGTTTCTTTGTTATTTCT
GAATAACTTGATTTTTCACAAGCAATTTCATTCACAGACGAAGATTTCTT
GTTTgcgattttatttattttgcctTCCNATTTTTCACAAGCAATTTCAT
TCACAGACGAAGATTTCTTGTTTgcgattttatttattttgtgttttcaa
TTTCTGCGACTGCTTTATTCACATTGTTAGTTGACACTTTAgccttcaaa
tttgaaatttcctccCGTTGTGCTTTTATTATGTTCTCACATGCGTCGat
ttctttttgtaaatctCCAACAGACTTgaagttcaatttctttttcaatt
ctgGTGTTATGATCACACAGCTCATGCATTGATAGCTTCTAGATTTGTGT
TGAAGATAAAGCTGGATTTGATAAGGAGGAAGCTCAGAGCAAGCCAAATG
AACTTGACGTTCGCATTTCTTGCATTGTAAAGTGTCCTTTTTATTTGTGT
TTGCATGGATGAGGCAGCTTGATGGGGTACAATAACCAATTTCCTCGGAT
TTTCGTTCGTATATTTTTCCAGTTATTTCCGCCATATTGTGCACATTTTT
TGCTGCTCTCGCGATGCGACTGTATTTGAcgtaaaataaaattgaatgag
ACTGAGACAATTTCACTTCAATAATTCTCTTTTCAAAAAGGAATCAAACA
TTGTATGTAGCAGATGCCTCCAGACCGGACATAATCGAAGGAACAAATCT
TGCCCAAGGCATCGGATCAACCAG

Coding sequence (CDS) from alignment at sc0005581:40..963

>TCONS_00044441 ID=TCONS_00044441|Name=TCONS_00044441|organism=Clytia hemisphaerica|type=CDS|length=402bp|location=Sequence derived from alignment at sc0005581:40..963 (Clytia hemisphaerica)
ttattttgtgttttcaaTTTCTGCGACTGCTTTATTCACATTGTTAGTTG
ACACTTTAgccttcaaatttgaaatttcctccCGTTGTGCTTTTATTATG
TTCTCACATGCGTCGatttctttttgtaaatctCCAACAGACTTgaagtt
caatttctttttcaattctgGTGTTATGATCACACAGCTCATGCATTGAT
AGCTTCTAGATTTGTGTTGAAGATAAAGCTGGATTTGATAAGGAGGAAGC
TCAGAGCAAGCCAAATGAACTTGACGTTCGCATTTCTTGCATTGTAAAGT
GTCCTTTTTATTTGTGTTTGCATGGATGAGGCAGCTTGATGGGGTACAAT
AACCAATTTCCTCGGATTTTCGTTCGTATATTTTTCCAGTTATTTCCGCC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028073XLOC_028073Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044441-proteinTCONS_00044441-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044441-exon-sc0005581-1491911889:40..963TCONS_00044441-exon-sc0005581-1491911889:40..963Clytia hemisphaericaexon
TCONS_00044441-exon-sc0005581-1510915933:40..963TCONS_00044441-exon-sc0005581-1510915933:40..963Clytia hemisphaericaexon
TCONS_00044441-exon-sc0005581-1575043694:40..963TCONS_00044441-exon-sc0005581-1575043694:40..963Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005581supercontigsc0005581:40..963 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.953704	0.715713	1.23024	0.99463	0.937998	0.365387	0.90546	0.658206	0.649854	0.763412	0.355203	0.967819	0.613317	1.075	0.720998	0.693245	0.273176	0.490755	0.656197	0.870756	0.539834	0.557519	0.0794243	0.666785	0.599879	1.32606	0.348167	0.708599	0.50692	0.45219
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044441 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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