TCONS_00044474 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044474
Unique NameTCONS_00044474
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length396

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044474 ID=TCONS_00044474|Name=TCONS_00044474|organism=Clytia hemisphaerica|type=transcript|length=396bp
ggtcattaaaatgtaCCTATCCAGAGCAATTACCACTAGGGTTAAGACTG
ATGAACCAGACATGAGCAACGCAAAATAAGCTCTTGCAAAGTCTATTGAG
CAACTAAGTCGAGCATTTGGTGATAACGTTTGGTAAGCGTTTATAGGGAA
TACAACCAGACCAGTCAATGCATCTGAAATGGCCAAAGATGAGAGAATTT
TATTGGATTTGTTTCGTTGGTCAGGCATCCAGAGGATATAGAAGGCAATG
ATATTTCCCACAGCTGCAACAATACCACATAGGATAAACAGTATACCATA
TACCAGGAATGTTTCTTCGGATAGTAATGAGAAGCGAGGGTTACACATGG
TGAATGATTATGTCTTCAGTGTTTTCAAACCTTTTTTGAGTATACC
Run BLAST on NCBI

protein sequence of TCONS_00044474-protein

>TCONS_00044474-protein ID=TCONS_00044474-protein|Name=TCONS_00044474-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MCNPRFSLLSEETFLVYGILFILCGIVAAVGNIIAFYILWMPDQRNKSNK
ILSSLAISDALTGLVVFPINAYQTLSPNARLSCSIDFARAYFALLMSGSS
VLTLVVIALDRYILMT
Run BLAST on NCBI

transcript from alignment at sc0005633:3725..4120

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044474 ID=TCONS_00044474|Name=TCONS_00044474|organism=Clytia hemisphaerica|type=transcript|length=396bp|location=Sequence derived from alignment at sc0005633:3725..4120 (Clytia hemisphaerica)
GGTATACTCAAAAAAGGTTTGAAAACACTGAAGACATAATCATTCACCAT
GTGTAACCCTCGCTTCTCATTACTATCCGAAGAAACATTCCTGGTATATG
GTATACTGTTTATCCTATGTGGTATTGTTGCAGCTGTGGGAAATATCATT
GCCTTCTATATCCTCTGGATGCCTGACCAACGAAACAAATCCAATAAAAT
TCTCTCATCTTTGGCCATTTCAGATGCATTGACTGGTCTGGTTGTATTCC
CTATAAACGCTTACCAAACGTTATCACCAAATGCTCGACTTAGTTGCTCA
ATAGACTTTGCAAGAGCTTATTTTGCGTTGCTCATGTCTGGTTCATCAGT
CTTAACCCTAGTGGTAATTGCTCTGGATAGGtacattttaatgacc

Coding sequence (CDS) from alignment at sc0005633:3725..4120

>TCONS_00044474 ID=TCONS_00044474|Name=TCONS_00044474|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at sc0005633:3725..4120 (Clytia hemisphaerica)
ATGTGTAACCCTCGCTTCTCATTACTATCCGAAGAAACATTCCTGGTATA
TGGTATACTGTTTATCCTATGTGGTATTGTTGCAGCTGTGGGAAATATCA
TTGCCTTCTATATCCTCTGGATGCCTGACCAACGAAACAAATCCAATAAA
ATTCTCTCATCTTTGGCCATTTCAGATGCATTGACTGGTCTGGTTGTATT
CCCTATAAACGCTTACCAAACGTTATCACCAAATGCTCGACTTAGTTGCT
CAATAGACTTTGCAAGAGCTTATTTTGCGTTGCTCATGTCTGGTTCATCA
GTCTTAACCCTAGTGGTAATTGCTCTGGATAGGtacattttaatgacc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028105XLOC_028105Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044474-exon-sc0005633-1491911889:3725..4120TCONS_00044474-exon-sc0005633-1491911889:3725..4120Clytia hemisphaericaexon
TCONS_00044474-exon-sc0005633-1510915933:3725..4120TCONS_00044474-exon-sc0005633-1510915933:3725..4120Clytia hemisphaericaexon
TCONS_00044474-exon-sc0005633-1575043694:3725..4120TCONS_00044474-exon-sc0005633-1575043694:3725..4120Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044474-proteinTCONS_00044474-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005633supercontigsc0005633:3725..4120 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.185007	0.214811	0.210159	0.511698	0	2.43916	1.37011	2.44903	1.92261	0.384425	1.58748	1.35351	1.70347	0	0	0	0	5.03614	3.79873	0.679778	0.727146	0.21753	0	0	0.363585	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044474 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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