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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044503 ID=TCONS_00044503|Name=TCONS_00044503|organism=Clytia hemisphaerica|type=transcript|length=2050bp
CTCAAAGCCTCTTTCGCCAATTCGCGCTGATAAAGATGGACGCAGAAAAT
GGTAATGGAGATAATATCCCTGCAGCTCCTCAGGAACCTGCAGAAGAACA
TGCTGATGAGGTCCAGCCCATCAACGAACAACCTCCAGCCCCTACTGACA
GATTTGAACTCGATCCAGAGGCGGCTGAAGAGAAATGGGAACTCCCAAAC
AATCTTTTAGAATACATCCACAAATATATCAAACTGCATGTAGCTGATAA
AGATATCAAAGACAGCATTGTTTGGGAAAATCCTGTACCAACAAATCTAA
AACAGGTACCTGATCTTGACAGCTACATCCGCACGATACTGTCAAATAAt
aacaaatcaataactcttaaaTCAGAAAAGACATTAAAGACAATTCAAGA
TAAAATGTTTTTGGTCTTTGgaccacttttgaaaatttgggatGCAGTTG
ACCAGGAAAAAAGCCGAAATCCTGAGGATGAATCAACCGTCCACCTCTCG
CATCTTCTTGACCAAACAATACTTTTGCTGTCTCAGATCCAAAACTCATG
CAACTATCACAGGAGAGAGAATATTTTGTCAACACTGATTGACTCCTCAT
CAAGAGTAAAAGACATCTTAAAGAACCAAAGTCAAGAGCTTAACAAGGCT
GATAACAAGCATTTATTTGGAGAAGAATTCGAAACCAAATTGATTAAAGA
CACCAAAGCTATCAAAAAGTCAGAATCTGTATTTACTGGAGTGAAAGCAT
CATCATCTACGTCAACTAGACCCAGATTCCCTGCAATTGGTTCAAAAAGG
CCCTTTCCAGGAGGCTCTTTTCCAGCAAGCCGTGGAAGAGGGCATTCAAG
ACCAGGCTTCTCATTCAGAGGTAAGAAAATTTCCTATCTTAAaccaaaaa
atatcaacttgtTTTGTACCTCCAAAACCGAGTCCCATTCCTCCACTAAG
ACAGGTCCAGGAAGAACAAGACCTTTCTTGTGTGCACCCTCTAGTAAAAT
CACTGTTTCCTCAGAAACTAGTCAAAAACCTGCCAAAGGCAGGTCGAACg
aagttttatttgaaaaattgggaaaaactaACACAAGATCCAGAGATACT
GAGAACAGTTCAAGGATATCAAATACCCTTTGTTTCAACTCCAAGGCAAA
ATCAAATTCCCAAATCTCCAAACATGTCAAAAGAGGAGATATCACTAGTG
GATCAGGAGATAGAGCAAATGTTGGAAAAGAATGCTATAGAAacaattca
ttttcaaaaccaaaatcaatttctaaGTTCTCTGTTCCTGGTTTCCAAAA
AGGATGGAGGGAACAGACCAGTGATAAATCTGAAGTCCCTAAACAAACAC
ATTCCTTACCTTCATTTCAAGATGGAAAGCTTGTCCTTACTCAAAGAACT
TCTAAAAAAGGGGGACTTCATGGTCAAGATAGACCTTTCGGACGCCTATT
TCTCAATCCCGTTAAGTCAAAAATCCAGGAAGTATGTGAGATTCAagtgg
aaacaaaaaatttaccaATTTCTTTGCCTGTGCTTCGGCCTTGCTCCAGC
ACCAAGAGTCTTTACAAAAGTGATGAAAGTTCCTATAGCCCTATTGAGAA
GGTTGAATGTCCGTCTAATAGTTTACTTGGACGACATTTTACTCCTGGCG
TCTTCCATTCAAGAGATAAGAATGGCCCGGGACACTTTGATGTTTTTACT
TCAACATCTGGGATTCACAATCAACATGAAGAAGTCAGTTCTAGAACCAG
TTCATCAGATTCAATTTCTGGGGGTGGAAGTGGACTCGTTGAATTAAAAA
TTGAGCCTGCCACCAGAGAAAATGGAAAAGATCATTTCCCAGTGTCAGAA
TATGCTGGAATCTTCTCAGGTATCGATAAGGGATCTCACAAAACTTCTTG
GCCTCTTGTCCTCAGCAGCAGTAGCAGTTCTCCCTGCACCTCTTCAGTAC
AGAGCTATACAAAGCCAACAGATAAAAGAGCTGTCGAGACACAAAAATTT
CGACTCAATGATTTCCTTGTCAGAAGAGGTGAAGGAAGAACTGAACTGGT Run BLAST on NCBI protein sequence of TCONS_00044503-protein >TCONS_00044503-protein ID=TCONS_00044503-protein|Name=TCONS_00044503-protein|organism=Clytia hemisphaerica|type=polypeptide|length=682bp
QSLFRQFALIKMDAENGNGDNIPAAPQEPAEEHADEVQPINEQPPAPTDR
FELDPEAAEEKWELPNNLLEYIHKYIKLHVADKDIKDSIVWENPVPTNLK
QVPDLDSYIRTILSNNNKSITLKSEKTLKTIQDKMFLVFGPLLKIWDAVD
QEKSRNPEDESTVHLSHLLDQTILLLSQIQNSCNYHRRENILSTLIDSSS
RVKDILKNQSQELNKADNKHLFGEEFETKLIKDTKAIKKSESVFTGVKAS
SSTSTRPRFPAIGSKRPFPGGSFPASRGRGHSRPGFSFRGKKISYLKPKN
INLFCTSKTESHSSTKTGPGRTRPFLCAPSSKITVSSETSQKPAKGRSNE
VLFEKLGKTNTRSRDTENSSRISNTLCFNSKAKSNSQISKHVKRGDITSG
SGDRANVGKECYRNNSFSKPKSISKFSVPGFQKGWREQTSDKSEVPKQTH
SLPSFQDGKLVLTQRTSKKGGLHGQDRPFGRLFLNPVKSKIQEVCEIQVE
TKNLPISLPVLRPCSSTKSLYKSDESSYSPIEKVECPSNSLLGRHFTPGV
FHSRDKNGPGHFDVFTSTSGIHNQHEEVSSRTSSSDSISGGGSGLVELKI
EPATRENGKDHFPVSEYAGIFSGIDKGSHKTSWPLVLSSSSSSPCTSSVQ
SYTKPTDKRAVETQKFRLNDFLVRRGEGRTEL Run BLAST on NCBI transcript from alignment at sc0005692:1..2273- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044503 ID=TCONS_00044503|Name=TCONS_00044503|organism=Clytia hemisphaerica|type=transcript|length=2273bp|location=Sequence derived from alignment at sc0005692:1..2273- (Clytia hemisphaerica)
CTCAAAGCCTCTTTCGCCAATTCGCGCTGATAAAGATGGACGCAGAGTAA
GTAGAATACTTAAAATTCCAAACATTCCTTTATGAATCCAAAATCATCTA
AGCTTAGCAGATTAACTACCTTCATTACATTCAGTGACTATGAAGGGTAG
TGTTGCCCCAACATATTGAAGGCATTATTTTACTCGATAAAGTTTTAAAA
AATCAAAAATCCTTTATTTCATTCAGTGATTATAAAGGGTAAAATAATGT
TTCAAAATCTCTTTCCTAGAAATGGTAATGGAGATAATATCCCTGCAGCT
CCTCAGGAACCTGCAGAAGAACATGCTGATGAGGTCCAGCCCATCAACGA
ACAACCTCCAGCCCCTACTGACAGATTTGAACTCGATCCAGAGGCGGCTG
AAGAGAAATGGGAACTCCCAAACAATCTTTTAGAATACATCCACAAATAT
ATCAAACTGCATGTAGCTGATAAAGATATCAAAGACAGCATTGTTTGGGA
AAATCCTGTACCAACAAATCTAAAACAGGTACCTGATCTTGACAGCTACA
TCCGCACGATACTGTCAAATAATAACAAATCAATAACTCTTAAATCAGAA
AAGACATTAAAGACAATTCAAGATAAAATGTTTTTGGTCTTTGGACCACT
TTTGAAAATTTGGGATGCAGTTGACCAGGAAAAAAGCCGAAATCCTGAGG
ATGAATCAACCGTCCACCTCTCGCATCTTCTTGACCAAACAATACTTTTG
CTGTCTCAGATCCAAAACTCATGCAACTATCACAGGAGAGAGAATATTTT
GTCAACACTGATTGACTCCTCATCAAGAGTAAAAGACATCTTAAAGAACC
AAAGTCAAGAGCTTAACAAGGCTGATAACAAGCATTTATTTGGAGAAGAA
TTCGAAACCAAATTGATTAAAGACACCAAAGCTATCAAAAAGTCAGAATC
TGTATTTACTGGAGTGAAAGCATCATCATCTACGTCAACTAGACCCAGAT
TCCCTGCAATTGGTTCAAAAAGGCCCTTTCCAGGAGGCTCTTTTCCAGCA
AGCCGTGGAAGAGGGCATTCAAGACCAGGCTTCTCATTCAGAGGTAAGAA
AATTTCCTATCTTAAACCAAAAAATATCAACTTGTTTTGTACCTCCAAAA
CCGAGTCCCATTCCTCCACTAAGACAGGTCCAGGAAGAACAAGACCTTTC
TTGTGTGCACCCTCTAGTAAAATCACTGTTTCCTCAGAAACTAGTCAAAA
ACCTGCCAAAGGCAGGTCGAACGAAGTTTTATTTGAAAAATTGGGAAAAA
CTAACACAAGATCCAGAGATACTGAGAACAGTTCAAGGATATCAAATACC
CTTTGTTTCAACTCCAAGGCAAAATCAAATTCCCAAATCTCCAAACATGT
CAAAAGAGGAGATATCACTAGTGGATCAGGAGATAGAGCAAATGTTGGAA
AAGAATGCTATAGAAACAATTCATTTTCAAAACCAAAATCAATTTCTAAG
TTCTCTGTTCCTGGTTTCCAAAAAGGATGGAGGGAACAGACCAGTGATAA
ATCTGAAGTCCCTAAACAAACACATTCCTTACCTTCATTTCAAGATGGAA
AGCTTGTCCTTACTCAAAGAACTTCTAAAAAAGGGGGACTTCATGGTCAA
GATAGACCTTTCGGACGCCTATTTCTCAATCCCGTTAAGTCAAAAATCCA
GGAAGTATGTGAGATTCAAGTGGAAACAAAAAATTTACCAATTTCTTTGC
CTGTGCTTCGGCCTTGCTCCAGCACCAAGAGTCTTTACAAAAGTGATGAA
AGTTCCTATAGCCCTATTGAGAAGGTTGAATGTCCGTCTAATAGTTTACT
TGGACGACATTTTACTCCTGGCGTCTTCCATTCAAGAGATAAGAATGGCC
CGGGACACTTTGATGTTTTTACTTCAACATCTGGGATTCACAATCAACAT
GAAGAAGTCAGTTCTAGAACCAGTTCATCAGATTCAATTTCTGGGGGTGG
AAGTGGACTCGTTGAATTAAAAATTGAGCCTGCCACCAGAGAAAATGGAA
AAGATCATTTCCCAGTGTCAGAATATGCTGGAATCTTCTCAGGTATCGAT
AAGGGATCTCACAAAACTTCTTGGCCTCTTGTCCTCAGCAGCAGTAGCAG
TTCTCCCTGCACCTCTTCAGTACAGAGCTATACAAAGCCAACAGATAAAA
GAGCTGTCGAGACACAAAAATTTCGACTCAATGATTTCCTTGTCAGAAGA
GGTGAAGGAAGAACTGAACTGGT Coding sequence (CDS) from alignment at sc0005692:1..2273- >TCONS_00044503 ID=TCONS_00044503|Name=TCONS_00044503|organism=Clytia hemisphaerica|type=CDS|length=4092bp|location=Sequence derived from alignment at sc0005692:1..2273- (Clytia hemisphaerica)
AAATGGTAATGGAGATAATATCCCTGCAGCTCCTCAGGAACCTGCAGAAG
AACATGCTGATGAGGTCCAGCCCATCAACGAACAACCTCCAGCCCCTACT
GACAGATTTGAACTCGATCCAGAGGCGGCTGAAGAGAAATGGGAACTCCC
AAACAATCTTTTAGAATACATCCACAAATATATCAAACTGCATGTAGCTG
ATAAAGATATCAAAGACAGCATTGTTTGGGAAAATCCTGTACCAACAAAT
CTAAAACAGGTACCTGATCTTGACAGCTACATCCGCACGATACTGTCAAA
TAATAACAAATCAATAACTCTTAAATCAGAAAAGACATTAAAGACAATTC
AAGATAAAATGTTTTTGGTCTTTGGACCACTTTTGAAAATTTGGGATGCA
GTTGACCAGGAAAAAAGCCGAAATCCTGAGGATGAATCAACCGTCCACCT
CTCGCATCTTCTTGACCAAACAATACTTTTGCTGTCTCAGATCCAAAACT
CATGCAACTATCACAGGAGAGAGAATATTTTGTCAACACTGATTGACTCC
TCATCAAGAGTAAAAGACATCTTAAAGAACCAAAGTCAAGAGCTTAACAA
GGCTGATAACAAGCATTTATTTGGAGAAGAATTCGAAACCAAATTGATTA
AAGACACCAAAGCTATCAAAAAGTCAGAATCTGTATTTACTGGAGTGAAA
GCATCATCATCTACGTCAACTAGACCCAGATTCCCTGCAATTGGTTCAAA
AAGGCCCTTTCCAGGAGGCTCTTTTCCAGCAAGCCGTGGAAGAGGGCATT
CAAGACCAGGCTTCTCATTCAGAGGTAAGAAAATTTCCTATCTTAAACCA
AAAAATATCAACTTGTTTTGTACCTCCAAAACCGAGTCCCATTCCTCCAC
TAAGACAGGTCCAGGAAGAACAAGACCTTTCTTGTGTGCACCCTCTAGTA
AAATCACTGTTTCCTCAGAAACTAGTCAAAAACCTGCCAAAGGCAGGTCG
AACGAAGTTTTATTTGAAAAATTGGGAAAAACTAACACAAGATCCAGAGA
TACTGAGAACAGTTCAAGGATATCAAATACCCTTTGTTTCAACTCCAAGG
CAAAATCAAATTCCCAAATCTCCAAACATGTCAAAAGAGGAGATATCACT
AGTGGATCAGGAGATAGAGCAAATGTTGGAAAAGAATGCTATAGAAACAA
TTCATTTTCAAAACCAAAATCAATTTCTAAGTTCTCTGTTCCTGGTTTCC
AAAAAGGATGGAGGGAACAGACCAGTGATAAATCTGAAGTCCCTAAACAA
ACACATTCCTTACCTTCATTTCAAGATGGAAAGCTTGTCCTTACTCAAAG
AACTTCTAAAAAAGGGGGACTTCATGGTCAAGATAGACCTTTCGGACGCC
TATTTCTCAATCCCGTTAAGTCAAAAATCCAGGAAGTATGTGAGATTCAA
GTGGAAACAAAAAATTTACCAATTTCTTTGCCTGTGCTTCGGCCTTGCTC
CAGCACCAAGAGTCTTTACAAAAGTGATGAAAGTTCCTATAGCCCTATTG
AGAAGGTTGAATGTCCGTCTAATAGTTTACTTGGACGACATTTTACTCCT
GGCGTCTTCCATTCAAGAGATAAGAATGGCCCGGGACACTTTGATGTTTT
TACTTCAACATCTGGGATTCACAATCAACATGAAGAAGTCAGTTCTAGAA
CCAGTTCATCAGATTCAATTTCTGGGGGTGGAAGTGGACTCGTTGAATTA
AAAATTGAGCCTGCCACCAGAGAAAATGGAAAAGATCATTTCCCAGTGTC
AGAATATGCTGGAATCTTCTCAGGTATCGATAAGGGATCTCACAAAACTT
CTTGGCCTCTTGTCCTCAGCAGCAGTAGCAGTTCTCCCTGCACCTCTTCA
GTACAGAGCTATACAAAGCCAACAGATAAAAGAGCTGTCGAGACACAAAA
ATTTCGACTCAATGATTTCCTTGTCAGAAGAGGTGAAGGAAGAACTGAAC
TGCAAAGCCTCTTTCGCCAATTCGCGCTGATAAAGATGGACGCAGAAAAT
GGTAATGGAGATAATATCCCTGCAGCTCCTCAGGAACCTGCAGAAGAACA
TGCTGATGAGGTCCAGCCCATCAACGAACAACCTCCAGCCCCTACTGACA
GATTTGAACTCGATCCAGAGGCGGCTGAAGAGAAATGGGAACTCCCAAAC
AATCTTTTAGAATACATCCACAAATATATCAAACTGCATGTAGCTGATAA
AGATATCAAAGACAGCATTGTTTGGGAAAATCCTGTACCAACAAATCTAA
AACAGGTACCTGATCTTGACAGCTACATCCGCACGATACTGTCAAATAAT
AACAAATCAATAACTCTTAAATCAGAAAAGACATTAAAGACAATTCAAGA
TAAAATGTTTTTGGTCTTTGGACCACTTTTGAAAATTTGGGATGCAGTTG
ACCAGGAAAAAAGCCGAAATCCTGAGGATGAATCAACCGTCCACCTCTCG
CATCTTCTTGACCAAACAATACTTTTGCTGTCTCAGATCCAAAACTCATG
CAACTATCACAGGAGAGAGAATATTTTGTCAACACTGATTGACTCCTCAT
CAAGAGTAAAAGACATCTTAAAGAACCAAAGTCAAGAGCTTAACAAGGCT
GATAACAAGCATTTATTTGGAGAAGAATTCGAAACCAAATTGATTAAAGA
CACCAAAGCTATCAAAAAGTCAGAATCTGTATTTACTGGAGTGAAAGCAT
CATCATCTACGTCAACTAGACCCAGATTCCCTGCAATTGGTTCAAAAAGG
CCCTTTCCAGGAGGCTCTTTTCCAGCAAGCCGTGGAAGAGGGCATTCAAG
ACCAGGCTTCTCATTCAGAGGTAAGAAAATTTCCTATCTTAAACCAAAAA
ATATCAACTTGTTTTGTACCTCCAAAACCGAGTCCCATTCCTCCACTAAG
ACAGGTCCAGGAAGAACAAGACCTTTCTTGTGTGCACCCTCTAGTAAAAT
CACTGTTTCCTCAGAAACTAGTCAAAAACCTGCCAAAGGCAGGTCGAACG
AAGTTTTATTTGAAAAATTGGGAAAAACTAACACAAGATCCAGAGATACT
GAGAACAGTTCAAGGATATCAAATACCCTTTGTTTCAACTCCAAGGCAAA
ATCAAATTCCCAAATCTCCAAACATGTCAAAAGAGGAGATATCACTAGTG
GATCAGGAGATAGAGCAAATGTTGGAAAAGAATGCTATAGAAACAATTCA
TTTTCAAAACCAAAATCAATTTCTAAGTTCTCTGTTCCTGGTTTCCAAAA
AGGATGGAGGGAACAGACCAGTGATAAATCTGAAGTCCCTAAACAAACAC
ATTCCTTACCTTCATTTCAAGATGGAAAGCTTGTCCTTACTCAAAGAACT
TCTAAAAAAGGGGGACTTCATGGTCAAGATAGACCTTTCGGACGCCTATT
TCTCAATCCCGTTAAGTCAAAAATCCAGGAAGTATGTGAGATTCAAGTGG
AAACAAAAAATTTACCAATTTCTTTGCCTGTGCTTCGGCCTTGCTCCAGC
ACCAAGAGTCTTTACAAAAGTGATGAAAGTTCCTATAGCCCTATTGAGAA
GGTTGAATGTCCGTCTAATAGTTTACTTGGACGACATTTTACTCCTGGCG
TCTTCCATTCAAGAGATAAGAATGGCCCGGGACACTTTGATGTTTTTACT
TCAACATCTGGGATTCACAATCAACATGAAGAAGTCAGTTCTAGAACCAG
TTCATCAGATTCAATTTCTGGGGGTGGAAGTGGACTCGTTGAATTAAAAA
TTGAGCCTGCCACCAGAGAAAATGGAAAAGATCATTTCCCAGTGTCAGAA
TATGCTGGAATCTTCTCAGGTATCGATAAGGGATCTCACAAAACTTCTTG
GCCTCTTGTCCTCAGCAGCAGTAGCAGTTCTCCCTGCACCTCTTCAGTAC
AGAGCTATACAAAGCCAACAGATAAAAGAGCTGTCGAGACACAAAAATTT
CGACTCAATGATTTCCTTGTCAGAAGAGGTGAAGGAAGAACTGAACTGCA
AAGCCTCTTTCGCCAATTCGCGCTGATAAAGATGGACGCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044503-exon-sc0005692-1575043694:2228..2273 | TCONS_00044503-exon-sc0005692-1575043694:2228..2273 | Clytia hemisphaerica | exon |
| TCONS_00044503-exon-sc0005692-1575043694:1..2004 | TCONS_00044503-exon-sc0005692-1575043694:1..2004 | Clytia hemisphaerica | exon |
| TCONS_00044503-exon-sc0005692-1510915933:2228..2273 | TCONS_00044503-exon-sc0005692-1510915933:2228..2273 | Clytia hemisphaerica | exon |
| TCONS_00044503-exon-sc0005692-1510915933:1..2004 | TCONS_00044503-exon-sc0005692-1510915933:1..2004 | Clytia hemisphaerica | exon |
| TCONS_00044503-exon-sc0005692-1491911889:2228..2273 | TCONS_00044503-exon-sc0005692-1491911889:2228..2273 | Clytia hemisphaerica | exon |
| TCONS_00044503-exon-sc0005692-1491911889:1..2004 | TCONS_00044503-exon-sc0005692-1491911889:1..2004 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0005692 | supercontig | sc0005692:1..2273 - |
Blast
The following BLAST results are available for this feature:
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