TCONS_00044526 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044526
Unique NameTCONS_00044526
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length853

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044526 ID=TCONS_00044526|Name=TCONS_00044526|organism=Clytia hemisphaerica|type=transcript|length=853bp
GTTTAGTTTCGGGTGGTCGATAGGCTGCACATAGTATTATAGGCTTTCGG
AAGGTTTCAACTTTTACTGCGATGAGTTCTGTTGTTTTAGATTTATACAC
CTCTTCACAAATAagattgtttttatatataatcaTGACACCACCCCATC
CGTCATCACGGTCATTTCGAAAGGATTCATAGCCTTTTGGAAGAAATTCA
TTGTCTTTAAGGGCTGGATCTAGATGTGTTTCAGTGCAGAGAACTATATC
AGTTTTTGAATCAAAAAGCACCTTTGCAAAAGCTTCCTTTTTACCCCATA
TACTCTGAAAGTTAATAATCAAGATGTTAAGTGACTTAGCTTTAACTTTT
GGGGGTCTTTCCTCGCTATCAGTGGATGAGGTTGATGATATGGTGCTGTC
AAAGATGGAATCTCCAACGTTTGGTAAACCACATTTTAAACAAGACCATG
AAAGTTCCTTGTGTGCAACATATAGGTCAAAAATAAGATCGCTCATACCA
ATACATGAAGAATGGTGCCATTGCATGCACACATCACAAGAAATGTTATT
TCCACGATTGGTTACTGCCTTTTGACAAACGCCACATGGATATTTTGGTG
TGCGTACCATTTTGTTCAAGTTTCATCAATCAAGTGTTGTAATGAACTTT
TCGCTTCAGAAAAGCACAGGTTGATCGCATCCCTGGTGATGCTGACTTAT
TGATGGGTGTAACACAGCATTTACCCATGAACTTTTTGCTTCAGGAAAGC
ACAGGTTGATCGCAACCCTGGTGATGCTGACTTATTGATGGGTTTTACAG
CATTAACCTTTGAAccatactttttgaaattttatattcTATTTGTATTC
TCC
Run BLAST on NCBI

protein sequence of TCONS_00044526-protein

>TCONS_00044526-protein ID=TCONS_00044526-protein|Name=TCONS_00044526-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
MVRTPKYPCGVCQKAVTNRGNNISCDVCMQWHHSSCIGMSDLIFDLYVAH
KELSWSCLKCGLPNVGDSIFDSTISSTSSTDSEERPPKVKAKSLNILIIN
FQSIWGKKEAFAKVLFDSKTDIVLCTETHLDPALKDNEFLPKGYESFRND
RDDGWGGVMIIYKNNLICEEVYKSKTTELIAVKVETFRKPIILCAAYRPP
ETK
Run BLAST on NCBI

transcript from alignment at sc0005727:59..911

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044526 ID=TCONS_00044526|Name=TCONS_00044526|organism=Clytia hemisphaerica|type=transcript|length=853bp|location=Sequence derived from alignment at sc0005727:59..911 (Clytia hemisphaerica)
GGAGAATACAAATAgaatataaaatttcaaaaagtatggTTCAAAGGTTA
ATGCTGTAAAACCCATCAATAAGTCAGCATCACCAGGGTTGCGATCAACC
TGTGCTTTCCTGAAGCAAAAAGTTCATGGGTAAATGCTGTGTTACACCCA
TCAATAAGTCAGCATCACCAGGGATGCGATCAACCTGTGCTTTTCTGAAG
CGAAAAGTTCATTACAACACTTGATTGATGAAACTTGAACAAAATGGTAC
GCACACCAAAATATCCATGTGGCGTTTGTCAAAAGGCAGTAACCAATCGT
GGAAATAACATTTCTTGTGATGTGTGCATGCAATGGCACCATTCTTCATG
TATTGGTATGAGCGATCTTATTTTTGACCTATATGTTGCACACAAGGAAC
TTTCATGGTCTTGTTTAAAATGTGGTTTACCAAACGTTGGAGATTCCATC
TTTGACAGCACCATATCATCAACCTCATCCACTGATAGCGAGGAAAGACC
CCCAAAAGTTAAAGCTAAGTCACTTAACATCTTGATTATTAACTTTCAGA
GTATATGGGGTAAAAAGGAAGCTTTTGCAAAGGTGCTTTTTGATTCAAAA
ACTGATATAGTTCTCTGCACTGAAACACATCTAGATCCAGCCCTTAAAGA
CAATGAATTTCTTCCAAAAGGCTATGAATCCTTTCGAAATGACCGTGATG
ACGGATGGGGTGGTGTCAtgattatatataaaaacaatctTATTTGTGAA
GAGGTGTATAAATCTAAAACAACAGAACTCATCGCAGTAAAAGTTGAAAC
CTTCCGAAAGCCTATAATACTATGTGCAGCCTATCGACCACCCGAAACTA
AAC

Coding sequence (CDS) from alignment at sc0005727:59..911

>TCONS_00044526 ID=TCONS_00044526|Name=TCONS_00044526|organism=Clytia hemisphaerica|type=CDS|length=609bp|location=Sequence derived from alignment at sc0005727:59..911 (Clytia hemisphaerica)
ATGGTACGCACACCAAAATATCCATGTGGCGTTTGTCAAAAGGCAGTAAC
CAATCGTGGAAATAACATTTCTTGTGATGTGTGCATGCAATGGCACCATT
CTTCATGTATTGGTATGAGCGATCTTATTTTTGACCTATATGTTGCACAC
AAGGAACTTTCATGGTCTTGTTTAAAATGTGGTTTACCAAACGTTGGAGA
TTCCATCTTTGACAGCACCATATCATCAACCTCATCCACTGATAGCGAGG
AAAGACCCCCAAAAGTTAAAGCTAAGTCACTTAACATCTTGATTATTAAC
TTTCAGAGTATATGGGGTAAAAAGGAAGCTTTTGCAAAGGTGCTTTTTGA
TTCAAAAACTGATATAGTTCTCTGCACTGAAACACATCTAGATCCAGCCC
TTAAAGACAATGAATTTCTTCCAAAAGGCTATGAATCCTTTCGAAATGAC
CGTGATGACGGATGGGGTGGTGTCAtgattatatataaaaacaatctTAT
TTGTGAAGAGGTGTATAAATCTAAAACAACAGAACTCATCGCAGTAAAAG
TTGAAACCTTCCGAAAGCCTATAATACTATGTGCAGCCTATCGACCACCC
GAAACTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028149XLOC_028149Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044526-proteinTCONS_00044526-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044526-exon-sc0005727-1491911889:59..911TCONS_00044526-exon-sc0005727-1491911889:59..911Clytia hemisphaericaexon
TCONS_00044526-exon-sc0005727-1510915933:59..911TCONS_00044526-exon-sc0005727-1510915933:59..911Clytia hemisphaericaexon
TCONS_00044526-exon-sc0005727-1575043694:59..911TCONS_00044526-exon-sc0005727-1575043694:59..911Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005727supercontigsc0005727:59..911 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.762013	1.44678	0.548669	0.673274	2.10348	2.02247	2.4419	1.82006	0.741288	0.84406	0.739085	2.35368	0.329746	0.307599	0.0938452	0.272586	0.184246	0.280849	0	0.122561	0.276389	0.195824	0.100979	0.343566	0	0.197796	0.148906	0.0659877	0	0.107578
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR005135Endo/exonuclease/phosphatase
IPR019786Zinc_finger_PHD-type_CS
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044526 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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