TCONS_00044527 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044527
Unique NameTCONS_00044527
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length469

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044527 ID=TCONS_00044527|Name=TCONS_00044527|organism=Clytia hemisphaerica|type=transcript|length=469bp
CCCGAGCACTTACAGACAGGGTGTTAGGGAAGGattggtgatagactctc
ttcTTTCAGTGAGAAACTAATGGTGTAATGTGTCAATTGATTGAGCCATT
CCATCACCCATTTCTTattcattttttgactttttagtgtTATTTCAGAG
AAATTAATTTTAAACAATtatttcgggaaatgcatccTTGCAATGTATTC
TAACATTACGTCAGTTTTAcgaaagctgattggttgcacGATTGGTGTCG
TATTGAGTAGTACATaatttataacttttgaagtcATTACAATGGTGAAT
ATCATGAACATGAAGATGAAACATTTGATAAGAATGAAGATTCATTTAAC
ACGGTATATAATTCATTACTTATATTGAATTAAAGTAGAAATTTAAACTT
TGTTGATGTTTATCGCAAGTGGTCGTTAACTAGGTGGACATTATTGGTGT
AAATTTGTATATAATGAAC
Run BLAST on NCBI

transcript from alignment at sc0005728:3322..3790

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044527 ID=TCONS_00044527|Name=TCONS_00044527|organism=Clytia hemisphaerica|type=transcript|length=469bp|location=Sequence derived from alignment at sc0005728:3322..3790 (Clytia hemisphaerica)
GTTCATTATATACAAATTTACACCAATAATGTCCACCTAGTTAACGACCA
CTTGCGATAAACATCAACAAAGTTTAAATTTCTACTTTAATTCAATATAA
GTAATGAATTATATACCGTGTTAAATGAATCTTCATTCTTATCAAATGTT
TCATCTTCATGTTCATGATATTCACCATTGTAATgacttcaaaagttata
aattATGTACTACTCAATACGACACCAATCgtgcaaccaatcagctttcg
TAAAACTGACGTAATGTTAGAATACATTGCAAggatgcatttcccgaaat
aATTGTTTAAAATTAATTTCTCTGAAATAacactaaaaagtcaaaaaatg
aatAAGAAATGGGTGATGGAATGGCTCAATCAATTGACACATTACACCAT
TAGTTTCTCACTGAAAgaagagagtctatcaccaatCCTTCCCTAACACC
CTGTCTGTAAGTGCTCGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028150XLOC_028150Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044527-exon-sc0005728-1491911889:3322..3790TCONS_00044527-exon-sc0005728-1491911889:3322..3790Clytia hemisphaericaexon
TCONS_00044527-exon-sc0005728-1510915933:3322..3790TCONS_00044527-exon-sc0005728-1510915933:3322..3790Clytia hemisphaericaexon
TCONS_00044527-exon-sc0005728-1575043694:3322..3790TCONS_00044527-exon-sc0005728-1575043694:3322..3790Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005728supercontigsc0005728:3322..3790 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.409359	0.148834	0.308998	0.151153	0	0	0	0	0.114986	0	0	0	3.23366	2.52232	0.286671	0	0	0	5.28826	4.89176	0.604552	0.84796	0.370286	1.07457	0.146503	1.3382	0	0.199682	0.605808	0.347627
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044527 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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