TCONS_00044532 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044532
Unique NameTCONS_00044532
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length512

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044532 ID=TCONS_00044532|Name=TCONS_00044532|organism=Clytia hemisphaerica|type=transcript|length=512bp
gtTACATTGAGAAGTTCACAGAATATTTGAGTTTGTTCATCGGCAATCAT
TTAAGACGATTTGAACCGAGTGATCATTTCCCAACTGTTGAGCTGCTTTA
TCTCTTCCTCAAATACACCATGCAACAGAATCTACCAGAGACGTTTTCAA
GTTGTCTGGACATTTGGATCATCTTCTTAGATTATCTTGTTGATAAAGTT
TCTTCGTGCATCACAAGTAATTTCAAAGTGGCTGCTATGGAAAGATATGT
GGCTTGTCTACAAGAACTGTTGATTGAAATGCTTAAGAAAATTCAATTCC
AACACAACGCTGATTGGCTGGACACTGTTGACATGGAGAAATATGACGAT
GACAGTGAAACAGAATGGGAGAAGTTTATCAGTCCGTGTTTAGAAGTCAT
TGAAAAGATTTCACAATTGTTGCCCGAAGAATCTTTCACACAATGTTCAC
AAACTTTCAAAGAAAACTTGGATGTCTACTTTGCTTTATCAAATGTTATT
TCAAATGATTGT
Run BLAST on NCBI

transcript from alignment at sc0005737:1726..3479+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044532 ID=TCONS_00044532|Name=TCONS_00044532|organism=Clytia hemisphaerica|type=transcript|length=1754bp|location=Sequence derived from alignment at sc0005737:1726..3479+ (Clytia hemisphaerica)
gtTACATTGAGAAGTTCACAGAATATTTGAGTTTGTTCATCGGCAATCAT
TTAAGACGATTTGAACCGAGTGATCATTTCCCAACTGTTGAGCTGCTTTA
TCTCTTCCTCAAATACACCATGCAACAGGTAGGTTACGTCTTACtcttat
tgggcttttccagaaaaaaaccgtataccccttgccgaggaggtccatcc
ctctgtggctggaaatactgtaaccccctggaattccaggcaatttcagc
tttaaacccctctggaattctgaattttagtaggatttgaAAAGCTACcc
ctatggaattccagttatttttgacagatttttgtatctccctttggaat
tccgccacatatcaaacctttaccccttggaacggaaatggacctcctca
acagggggtatacggttttttccTTTGTTCAGTTCAGAGCATAAAACAGC
TGGATATGCGATTCGCGATAAGCAGTGATAAGAGGATCTCCGAGGCACGA
GCATTATACTCTATAGATTGAGTGAGGCCataaaaatttccgaaaaaaaa
atccaaatggGATCCCGTTTTAAACACTATTCGTATCTACTGAAGCCTAA
GGAGGAAGGCATATATAATTTATCTTTTATATTAtactaaaatcttaaaa
aagcaAATTATGATCTTTCATTACGCAGAATCTACCAGAGACGTTTTCAA
GTTGTCTGGACATTTGGATCATCTTCTTAGATTATCTTGTTGATAAAGTT
TCTTCGTGCATCACAAGTAATTTCAAAGTGGCTGCTATGGAAAGGTAAGG
TTGTGTTGGGGTATTTTGGGTTATATGCACAACCTTAATGACTTTTAtgt
gacttttcagtttttttctacCTCATACGTTATAATCTTTGCAGCCAATC
AGTTGtcgtaataaaaatgacgtaacCTTGACTGCTATGTTAAAGTTTTC
GTCAAATTTACGTGACTCTAATCAGCATTGATtggtttttatattttcta
ccATAGATATGTGGCTTGTCTACAAGAACTGTTGATTGAAATGCTTAAGA
AAATTCAATTCCAACACAACGCTGATTGGCTGGACACTGTTGACATGGAG
AAATATGACGATGACGTAAGCTATTCAAAATACTCTCATCTGATTGATTA
AGAAGATGAagtataattttgaattttatattattttcatgatATACACT
ACTTCACTTGTACAGCAATCTCTCTTGTGCAATGTTCTCTGATTTAGTTA
AGGGCCTATCTTCACTTGGGAAGCTGTATGTCTTGTCTTGCTTTGCACTA
CTGGAATATCTNGATTTAGTTTAGGGCCTATCTTCACTTGGGAAGCTGTA
TGTCTTGTCTTGCTTTGCACTACTGGAATATCTTCTGACTGTTCAATTCA
TGTTCTACAACATTACATAGATGCTTTGCCTTATAGACAATTCTgctcac
ttttatttttttcgttaCAGAGTGAAACAGAATGGGAGAAGTTTATCAGT
CCGTGTTTAGAAGTCATTGAAAAGATTTCACAATTGTTGCCCGAAGAATC
TTTCACACAATGTGTAAGTTGATCCGCTTAgttttttcttcatcattttt
AATAACATCATCTCTGCCTTTTTTTGTCGGCTATCTACTATCCAATGGCT
TTTATTTAAAATCCCTTTTAAAATCCTTCCTCTTCTAGTCACAAACTTTC
AAAGAAAACTTGGATGTCTACTTTGCTTTATCAAATGTTATTTCAAATGA
TTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028154XLOC_028154Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044532-exon-sc0005737-1491911889:1726..1853TCONS_00044532-exon-sc0005737-1491911889:1726..1853Clytia hemisphaericaexon
TCONS_00044532-exon-sc0005737-1510915933:1726..1853TCONS_00044532-exon-sc0005737-1510915933:1726..1853Clytia hemisphaericaexon
TCONS_00044532-exon-sc0005737-1575043694:1726..1853TCONS_00044532-exon-sc0005737-1575043694:1726..1853Clytia hemisphaericaexon
TCONS_00044532-exon-sc0005737-1491911889:2404..2519TCONS_00044532-exon-sc0005737-1491911889:2404..2519Clytia hemisphaericaexon
TCONS_00044532-exon-sc0005737-1510915933:2404..2519TCONS_00044532-exon-sc0005737-1510915933:2404..2519Clytia hemisphaericaexon
TCONS_00044532-exon-sc0005737-1575043694:2404..2519TCONS_00044532-exon-sc0005737-1575043694:2404..2519Clytia hemisphaericaexon
TCONS_00044532-exon-sc0005737-1491911889:2732..2840TCONS_00044532-exon-sc0005737-1491911889:2732..2840Clytia hemisphaericaexon
TCONS_00044532-exon-sc0005737-1510915933:2732..2840TCONS_00044532-exon-sc0005737-1510915933:2732..2840Clytia hemisphaericaexon
TCONS_00044532-exon-sc0005737-1575043694:2732..2840TCONS_00044532-exon-sc0005737-1575043694:2732..2840Clytia hemisphaericaexon
TCONS_00044532-exon-sc0005737-1491911889:3196..3288TCONS_00044532-exon-sc0005737-1491911889:3196..3288Clytia hemisphaericaexon
TCONS_00044532-exon-sc0005737-1510915933:3196..3288TCONS_00044532-exon-sc0005737-1510915933:3196..3288Clytia hemisphaericaexon
TCONS_00044532-exon-sc0005737-1575043694:3196..3288TCONS_00044532-exon-sc0005737-1575043694:3196..3288Clytia hemisphaericaexon
TCONS_00044532-exon-sc0005737-1491911889:3414..3479TCONS_00044532-exon-sc0005737-1491911889:3414..3479Clytia hemisphaericaexon
TCONS_00044532-exon-sc0005737-1510915933:3414..3479TCONS_00044532-exon-sc0005737-1510915933:3414..3479Clytia hemisphaericaexon
TCONS_00044532-exon-sc0005737-1575043694:3414..3479TCONS_00044532-exon-sc0005737-1575043694:3414..3479Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005737supercontigsc0005737:1726..3479 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.48087e-09	0	0	0	0	0	0	0	0	6.25984e-06	0	0	6.31007e-08	10.0256	0.936584	0.387739	0	0.00266223	4.4582	2.00462e-05	0	0.073878	0	3.85529e-07	0	0	0	9.10859e-07	0	24.4682
Blast
[Close]
BLAST of TCONS_00044532 vs. Swiss-Prot (Human)
Match: XPO6 (Exportin-6 OS=Homo sapiens GN=XPO6 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.690e-34
Identity = 74/166 (44.58%), Postives = 101/166 (60.84%), Query Frame = 3 
Query:    3 YIEKFTEYLSLFIGNHLRRFEPSDHFPTVELLYLFLKYTMQQNLPETFSSCLDIWIIFLDYLVDKVSSCITSNFKVAAMERYVACLQELLIEMLKKIQFQHNADWLDTVDMEKYDDDSETEWEKFISPCLEVIEKISQLLPEESFTQCSQTFKENLDVYFALSNVI 500
            YIEKFT++L LF+  HLRR E    FP VE L L  KYT  Q   E + SCLDIW +FLDYL  K+ S +    K A + RY   L  LL E+L +IQF++N   L+ +D E  DDD +TEW++++   LEV+ K+ +LLP  +F+      ++NL+VY  L   I
Sbjct:  367 YIEKFTDFLRLFVSVHLRRIESYSQFPVVEFLTLLFKYTFHQPTHEGYFSCLDIWTLFLDYLTSKIKSRLGD--KEAVLNRYEDALVLLLTEVLNRIQFRYNQAQLEELDDETLDDDQQTEWQRYLRQSLEVVAKVMELLPTHAFSTLFPVLQDNLEVYLGLQQFI 530
The following BLAST results are available for this feature:
BLAST of TCONS_00044532 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
XPO62.690e-3444.58Exportin-6 OS=Homo sapiens GN=XPO6 PE=1 SV=1[more]
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