TCONS_00044534 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044534
Unique NameTCONS_00044534
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length732

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044534 ID=TCONS_00044534|Name=TCONS_00044534|organism=Clytia hemisphaerica|type=transcript|length=732bp
AACAGACGGAAACCAGTAGAAAACAACACTCCACTTTCAAATTATTCCTT
AGTTACATCAAACCTCATAAAGCTGTAAGAAAAGACCCATTTAGCTCGTT
GAGTAAGGGAAGCCTTAGTAAAAGTAGGGATTGACGGCGAAATCTGTAAA
CCCCACTCCAAAAGAGTAACATCGACCTCTAAGGAATATGCCAAAGGGGC
CAGTTTACAGAGTAAATACTAAAGATGGGAAACTTGTCTAACAAATCGAC
CTGGGAAAAATTTCACCACAATGATTTTAGCCCAACGGAAAGATACAAAA
AACCTTAACCTAGAAGAGGAAGCTTTAAACAAGAACTTAGACTGCGTTCC
GCAGCCCTAAGTGAAGTTTCACTCTAGACTGCGTCCGCACGGCATAATGA
ATTCGTCTGGTTTTCAGcgatataaatttcaaaatcttcagAGGCCGAAG
GTCGACTATATCAGGTAACGGGTACAACAAGAGAGGCAgaggaagaagaa
aattatagTAACAACGACCGAAATGATATTTATGTTTATTCAGTTAAACA
TGAAAGAAAACTTGCATAAAAGAAAATAGTTTGATGTTAATTTATCGACA
CTGTAGATCAATACAGCTGTTACCTATAGATCTTGAATCCAGATTTCATA
TCAATTTCAGAACTGATTTGGATGACTTATGATAACTACGGAAACTTTTC
TGAATTGAAGTAGCCTTCTGATCATTTCCGAT
Run BLAST on NCBI

transcript from alignment at sc0005740:957..1688

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044534 ID=TCONS_00044534|Name=TCONS_00044534|organism=Clytia hemisphaerica|type=transcript|length=732bp|location=Sequence derived from alignment at sc0005740:957..1688 (Clytia hemisphaerica)
ATCGGAAATGATCAGAAGGCTACTTCAATTCAGAAAAGTTTCCGTAGTTA
TCATAAGTCATCCAAATCAGTTCTGAAATTGATATGAAATCTGGATTCAA
GATCTATAGGTAACAGCTGTATTGATCTACAGTGTCGATAAATTAACATC
AAACTATTTTCTTTTATGCAAGTTTTCTTTCATGTTTAACTGAATAAACA
TAAATATCATTTCGGTCGTTGTTActataattttcttcttcctcTGCCTC
TCTTGTTGTACCCGTTACCTGATATAGTCGACCTTCGGCCTctgaagatt
ttgaaatttatatcgCTGAAAACCAGACGAATTCATTATGCCGTGCGGAC
GCAGTCTAGAGTGAAACTTCACTTAGGGCTGCGGAACGCAGTCTAAGTTC
TTGTTTAAAGCTTCCTCTTCTAGGTTAAGGTTTTTTGTATCTTTCCGTTG
GGCTAAAATCATTGTGGTGAAATTTTTCCCAGGTCGATTTGTTAGACAAG
TTTCCCATCTTTAGTATTTACTCTGTAAACTGGCCCCTTTGGCATATTCC
TTAGAGGTCGATGTTACTCTTTTGGAGTGGGGTTTACAGATTTCGCCGTC
AATCCCTACTTTTACTAAGGCTTCCCTTACTCAACGAGCTAAATGGGTCT
TTTCTTACAGCTTTATGAGGTTTGATGTAACTAAGGAATAATTTGAAAGT
GGAGTGTTGTTTTCTACTGGTTTCCGTCTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028156XLOC_028156Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044534-exon-sc0005740-1491911889:957..1688TCONS_00044534-exon-sc0005740-1491911889:957..1688Clytia hemisphaericaexon
TCONS_00044534-exon-sc0005740-1510915933:957..1688TCONS_00044534-exon-sc0005740-1510915933:957..1688Clytia hemisphaericaexon
TCONS_00044534-exon-sc0005740-1575043694:957..1688TCONS_00044534-exon-sc0005740-1575043694:957..1688Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005740supercontigsc0005740:957..1688 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.13567	0.0661499	0.614451	0.225429	0.548876	0.144576	0.0872127	0.408237	0.457306	0.991284	0	0.8132	0.36092	0.702785	0.115557	0.0826736	0	0	0.14422	0.754581	0.393521	0.287918	0	0	0.145663	0.195001	0.279046	0.694879	0.301167	0.153421
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044534 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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