TCONS_00044547 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044547
Unique NameTCONS_00044547
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length448

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044547 ID=TCONS_00044547|Name=TCONS_00044547|organism=Clytia hemisphaerica|type=transcript|length=448bp
gttcaaatacaaaaaaagaattcttgatatgcgtaagtcatttttctagc
ggaaacaccctgaAAAAGCCGGTATTTGacccctctctgttactaaaaat
agaaacacggaggGAAAAAACCTGCTTTTTTGGGTGCtaccgttaaaaaa
tatgacgtcatcttgacttacttATCTAAGTTTTCGTATGTTTTAAACTT
CCTCACagctacttgtttcaaataaacaccCTTCCTAGAGGGTGGGAGGC
GTTCATTTGAAGGGGACGCTAATTTGAGGGAGGTGTACTTTAAAAATTTC
CCACAAAGGAGGAGCGTTTATTccagggggcgtttaaaagaaggggcgtt
tattcgaagtaataagGTGACCCTGATTTGAGGGAGGTGTACTTTAAAAA
TTTCCCACAAAGGAGGGGCGTTCATTCCagagggcgtttaaaagaagg
Run BLAST on NCBI

transcript from alignment at sc0005759:2482..2929

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044547 ID=TCONS_00044547|Name=TCONS_00044547|organism=Clytia hemisphaerica|type=transcript|length=448bp|location=Sequence derived from alignment at sc0005759:2482..2929 (Clytia hemisphaerica)
ccttcttttaaacgccctctGGAATGAACGCCCCTCCTTTGTGGGAAATT
TTTAAAGTACACCTCCCTCAAATCAGGGTCACcttattacttcgaataaa
cgccccttcttttaaacgccccctggAATAAACGCTCCTCCTTTGTGGGA
AATTTTTAAAGTACACCTCCCTCAAATTAGCGTCCCCTTCAAATGAACGC
CTCCCACCCTCTAGGAAGggtgtttatttgaaacaagtagctGTGAGGAA
GTTTAAAACATACGAAAACTTAGATaagtaagtcaagatgacgtcatatt
ttttaacggtaGCACCCAAAAAAGCAGGTTTTTTCcctccgtgtttctat
ttttagtaacagagaggggtCAAATACCGGCTTTTtcagggtgtttccgc
tagaaaaatgacttacgcatatcaagaattctttttttgtatttgaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028169XLOC_028169Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044547-exon-sc0005759-1491911889:2482..2929TCONS_00044547-exon-sc0005759-1491911889:2482..2929Clytia hemisphaericaexon
TCONS_00044547-exon-sc0005759-1510915933:2482..2929TCONS_00044547-exon-sc0005759-1510915933:2482..2929Clytia hemisphaericaexon
TCONS_00044547-exon-sc0005759-1575043694:2482..2929TCONS_00044547-exon-sc0005759-1575043694:2482..2929Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005759supercontigsc0005759:2482..2929 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.16148	0	1.18214	2.18186	0	0	0	0.180206	0.252011	0.467001	0	0	0.199336	0.308787	0	0.18291	0	0.571653	0.157999	0.165549	0.144164	0	0	0	0	0	0.204874	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044547 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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