TCONS_00044645 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044645
Unique NameTCONS_00044645
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length419

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044645 ID=TCONS_00044645|Name=TCONS_00044645|organism=Clytia hemisphaerica|type=transcript|length=419bp
CTGCggtgaagtttttcaaatttccttatAGAAATCTCATGTTTGGCACT
CCTACACGGTAGAAAAAGTGAAGAGATGAGAAATATGACGTAAACACGAT
GCAACTAGTAATTATATTCCCAagtgattacgaaaagttattCTTTCAAC
AATGGTAAGTTTTTTACTACGTCTATTAGGATGACGTCTTTGCAGATTCC
TGTGAGAGTTACTTTAAGAAGGTCATTGACATGCGAATGAGTTCAAGGAT
ATTATCTAAGGCCCTCTTTATATCACGATCAATAGGGGATAAAAGcttgc
ttttttatgctttctcACAAGCATTAATGTAAATTAAGGCAACGTAAAAA
GCTCGGTAAAATAATGGGAAGAAATATATTATCAGGTACGTATTATCCCT
GTATCACGCGAGTGGTATT
Run BLAST on NCBI

transcript from alignment at sc0005930:1218..1636-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044645 ID=TCONS_00044645|Name=TCONS_00044645|organism=Clytia hemisphaerica|type=transcript|length=419bp|location=Sequence derived from alignment at sc0005930:1218..1636- (Clytia hemisphaerica)
CTGCGGTGAAGTTTTTCAAATTTCCTTATAGAAATCTCATGTTTGGCACT
CCTACACGGTAGAAAAAGTGAAGAGATGAGAAATATGACGTAAACACGAT
GCAACTAGTAATTATATTCCCAAGTGATTACGAAAAGTTATTCTTTCAAC
AATGGTAAGTTTTTTACTACGTCTATTAGGATGACGTCTTTGCAGATTCC
TGTGAGAGTTACTTTAAGAAGGTCATTGACATGCGAATGAGTTCAAGGAT
ATTATCTAAGGCCCTCTTTATATCACGATCAATAGGGGATAAAAGCTTGC
TTTTTTATGCTTTCTCACAAGCATTAATGTAAATTAAGGCAACGTAAAAA
GCTCGGTAAAATAATGGGAAGAAATATATTATCAGGTACGTATTATCCCT
GTATCACGCGAGTGGTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028261XLOC_028261Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044645-exon-sc0005930-1575043694:1218..1636TCONS_00044645-exon-sc0005930-1575043694:1218..1636Clytia hemisphaericaexon
TCONS_00044645-exon-sc0005930-1510915933:1218..1636TCONS_00044645-exon-sc0005930-1510915933:1218..1636Clytia hemisphaericaexon
TCONS_00044645-exon-sc0005930-1491911889:1218..1636TCONS_00044645-exon-sc0005930-1491911889:1218..1636Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005930supercontigsc0005930:1218..1636 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.01874	2.269	1.12555	1.83677	0.389465	0.265507	0	1.50184	2.5974	2.59233	2.20723	2.88346	2.02576	3.84793	1.71101	2.8382	0.945416	2.43528	1.29918	1.89113	2.52557	5.43326	0.580285	0.675331	0	0.879779	0.61813	1.97294	2.67379	1.17632
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044645 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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