TCONS_00044658 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044658
Unique NameTCONS_00044658
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length646

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044658 ID=TCONS_00044658|Name=TCONS_00044658|organism=Clytia hemisphaerica|type=transcript|length=646bp
TTATCTTAAGAGGGATACAGAGACGGGGTTGCGGTAATATTATTTTCGAG
ACTATATTATAGTTTTTATAATTTNCATTCAAAGCTCATTGTTTGGTGAC
TAGAAGAATATTTCTTGATCTCAAAATGAAGACTACCTTAATGTTCGTTG
TCCTTCTCGGAGCAGTTATCAGCTCACAAGcttgGTTTTTCCCTACCAAA
GAAGTCTCTTGCAAGGCTTGCCAATACGCTGTCGGTTATTTAGATGGTCT
TCTTGTTTCTGACAAGAGTGAAAAAGCAATTGAAGCAGCCGTTGAAAAAT
TGTGCACCTATTTCCCTGATGTCTTCAAGAACGAATGCATTGTTTTGGTC
GAGAAATACGGTGATAAATTGATCGAACTCGCTGCCGCTCAAATCTCTTC
CGATAAAGTCTGCCCAACCCTTGGGTTCTGTTGAGATGTTATACCTTCAG
TCCTGAAGTGACAAACGATGTTTTCTAGaatgtatattttttattttgtc
atatCGTAAATATAAAGAATTATTAAAACACAAAGTCACACTATTCTTTG
AAAGCAATTTGACGATGATATTTTATGCACACTATTTCCAATTATATTTT
CACTCATCGAAAAATAACTACCTTCTTAAGCCTAACTTGTGCGGTC
Run BLAST on NCBI

protein sequence of TCONS_00044658-protein

>TCONS_00044658-protein ID=TCONS_00044658-protein|Name=TCONS_00044658-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MKTTLMFVVLLGAVISSQAWFFPTKEVSCKACQYAVGYLDGLLVSDKSEK
AIEAAVEKLCTYFPDVFKNECIVLVEKYGDKLIELAAAQISSDKVCPTLG
FC
Run BLAST on NCBI

transcript from alignment at sc0005952:266..2691-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044658 ID=TCONS_00044658|Name=TCONS_00044658|organism=Clytia hemisphaerica|type=transcript|length=2426bp|location=Sequence derived from alignment at sc0005952:266..2691- (Clytia hemisphaerica)
TTATCTTAAGAGGGATACAGAGACGGGGTTGCGGTAATATTATTTTCGAG
ACTATATTATAGTTTTTATAATTTNCATTCAAAGCTCATTGTTTGGTGAC
TAGAAGAATATTTCTTGATCTCAAAATGAAGACTACCTTAATGTTCGTTG
TCCTTCTCGGAGCAGTTATCAGCTCACAAGGTATGGATTATTTTGTTCCA
TTTAAAACAAGTTCTGATTGAACTTTTCTGAGTGAGGCTTAATCTAACCT
TACCTGATATAATAGATGTGGAGTTTTCTTAATGCGACACGCTTGAAGCT
CTAAAGATTGCTAAAAACTAATCTGTATATTTTGCCCACTTCTTTAAAGC
CTTAGCGTACTGGGCCAGAAAATACGTAATCTGTTACCACTTTAAATCTA
CCCAAATAGAGTGTTAAATACACCTTCTTAATCCGTCCCTATGAATTTGC
AATGAGTAGAAATATGAAACATGTATGGAAGGTTGGGATTAAATAGATTA
AAACTCGAAAGAGTCGTCCGTTTTCTTATCTCAAGTGGGACACAGAGACG
GGGTTGCGGTAATACATGCTTTTTTAATAAGAATACACTTTATAAGAGTG
TCCATGATGAAAATGGCCAAAAAATTAAGAATATGCTAAAAATATCACCA
TCATGGAATTTTGCTGCTCAAGCTAAGAATGTCATTTTTAGAGCACTTTC
AATTATAAATTGTCAATTACCACCCAAGTCAGACTCACTCCTTTCACAAA
AATACCATTTTATGCTTGAGATGTATCTATATGTATGTATGTATGTATGT
TAAATCTAGTCTGAATTAGGTGAATGCTTTAAGAATATTTTAGGTGGATT
TTTCCAAAAAAGTTATAAATATCCATGATGAAATGGATTTACACCATTCT
TATGAAAAAAAGCGTGACTTTATACTTATTTTTTCAATANGAGGGATACA
GAGACGGGGTTGCGGTAATATTATTTTCGAGACTATATTATAGTTTTTAT
AATTTTTTTTTCAGCTTGGTTTTTCCCTACCAAAGAAGTCTCTTGCAAGG
CTTGCCAATACGCTGTCGGTTATTTAGATGGTCTTCTTGTTTCTGACAAG
AGTGAAAAAGCAATTGAAGCAGCCGTTGAAAAATTGTGCACCTATTTCCC
TGATGTCTTCAAGAACGAAGTGAGTATAAAATATAACATTCAACTTTTTG
GAAGTATTATATCAGAAAAGGGTGTGCTTCCAACGGAGAAACAACAATGA
AATCTCATTATAATCGAGAAAAAGAAGATCAGTTGAGTTACCACCTTACT
GACTTTGGGTTGTCTCCTGGAGGGGGGGAGGATTAGGCAAAATGGGTGCC
GGTATGTGCGAAGCTATAAGGGTCCCTTTTTCACACCCTCGAAATCCCCT
CAAAGGGGCACAAAAACCATTAAAAAGAAAATTAAGTCAAACTTTCTCAG
ACATCTCGCAAACCTAGTACTCACCGGGGATTGTCTGCTTAGCTCCAGCT
TACTATAGCTCAAACGAATTTGCATTGCCCATATTTGAATAATGCATAAT
CTATCTTCCAGACGAAAATAATGTTATAGGTTTGAAAGGGAAATCTAGAC
AGCCAAGGCATTTGTAAAAAGAGGGAGATCAACTGTTTCAAAAATTTAAA
ATCTCAAAAATCTTACATTTTAGTGCATTGTTTTGGTCGAGAAATACGGT
GATAAATTGATCGAACTCGCTGCCGCTCAAATCTCTTCCGATAAAGTCTG
CCCAGTAAGTACATTCTAGTTTAGTTCTAAGTTCTATTTTGCAAGAGAAT
TTATGAAGCAAAGTTACATCACCATCATAGAATCCTTCGTAGGCATCTAT
TCTGTACCATTGACTTAAAAAACATATTAAAGGAGAATCCCAGACTATGT
TATGTTGTAGTCTAAAGAAGTAACCTCCAAGCCGATAGGCAAATTTGTGA
GCGGAATGTTTACAGTCCTGTAAGATAGTTGGCAGCTTTTTTAGAAATTC
TACCGTATCATACTTTATATGACCAATATGTAAACTCTGCAAATATCATT
TCACGTAAACTATTCATGTGAAGACGATAACATTGCACCTAGATAACACC
TGCTTTGATTCCCAACTGAGCAGTCTAATACTAATTAAGGATCAAGTACC
CAAAATTCGATGTTGGATATAAAATCATTTTTCTCTCCAATTTCAGACCC
TTGGGTTCTGTTGAGATGTTATACCTTCAGTCCTGAAGTGACAAACGATG
TTTTCTAGAATGTATATTTTTTATTTTGTCATATCGTAAATATAAAGAAT
TATTAAAACACAAAGTCACACTATTCTTTGAAAGCAATTTGACGATGATA
TTTTATGCACACTATTTCCAATTATATTTTCACTCATCGAAAAATAACTA
CCTTCTTAAGCCTAACTTGTGCGGTC

Coding sequence (CDS) from alignment at sc0005952:266..2691-

>TCONS_00044658 ID=TCONS_00044658|Name=TCONS_00044658|organism=Clytia hemisphaerica|type=CDS|length=1236bp|location=Sequence derived from alignment at sc0005952:266..2691- (Clytia hemisphaerica)
ACCCTTGGGTTCTGTTGATGCATTGTTTTGGTCGAGAAATACGGTGATAA
ATTGATCGAACTCGCTGCCGCTCAAATCTCTTCCGATAAAGTCTGCCCAC
TTGGTTTTTCCCTACCAAAGAAGTCTCTTGCAAGGCTTGCCAATACGCTG
TCGGTTATTTAGATGGTCTTCTTGTTTCTGACAAGAGTGAAAAAGCAATT
GAAGCAGCCGTTGAAAAATTGTGCACCTATTTCCCTGATGTCTTCAAGAA
CGAAATGAAGACTACCTTAATGTTCGTTGTCCTTCTCGGAGCAGTTATCA
GCTCACAAGACCCTTGGGTTCTGTTGATGCATTGTTTTGGTCGAGAAATA
CGGTGATAAATTGATCGAACTCGCTGCCGCTCAAATCTCTTCCGATAAAG
TCTGCCCACTTGGTTTTTCCCTACCAAAGAAGTCTCTTGCAAGGCTTGCC
AATACGCTGTCGGTTATTTAGATGGTCTTCTTGTTTCTGACAAGAGTGAA
AAAGCAATTGAAGCAGCCGTTGAAAAATTGTGCACCTATTTCCCTGATGT
CTTCAAGAACGAAATGAAGACTACCTTAATGTTCGTTGTCCTTCTCGGAG
CAGTTATCAGCTCACAAGACCCTTGGGTTCTGTTGATGCATTGTTTTGGT
CGAGAAATACGGTGATAAATTGATCGAACTCGCTGCCGCTCAAATCTCTT
CCGATAAAGTCTGCCCACTTGGTTTTTCCCTACCAAAGAAGTCTCTTGCA
AGGCTTGCCAATACGCTGTCGGTTATTTAGATGGTCTTCTTGTTTCTGAC
AAGAGTGAAAAAGCAATTGAAGCAGCCGTTGAAAAATTGTGCACCTATTT
CCCTGATGTCTTCAAGAACGAAATGAAGACTACCTTAATGTTCGTTGTCC
TTCTCGGAGCAGTTATCAGCTCACAAGACCCTTGGGTTCTGTTGATGCAT
TGTTTTGGTCGAGAAATACGGTGATAAATTGATCGAACTCGCTGCCGCTC
AAATCTCTTCCGATAAAGTCTGCCCACTTGGTTTTTCCCTACCAAAGAAG
TCTCTTGCAAGGCTTGCCAATACGCTGTCGGTTATTTAGATGGTCTTCTT
GTTTCTGACAAGAGTGAAAAAGCAATTGAAGCAGCCGTTGAAAAATTGTG
CACCTATTTCCCTGATGTCTTCAAGAACGAAATGAAGACTACCTTAATGT
TCGTTGTCCTTCTCGGAGCAGTTATCAGCTCACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028274XLOC_028274Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044658-exon-sc0005952-1575043694:2512..2691TCONS_00044658-exon-sc0005952-1575043694:2512..2691Clytia hemisphaericaexon
TCONS_00044658-exon-sc0005952-1575043694:1523..1677TCONS_00044658-exon-sc0005952-1575043694:1523..1677Clytia hemisphaericaexon
TCONS_00044658-exon-sc0005952-1575043694:938..1018TCONS_00044658-exon-sc0005952-1575043694:938..1018Clytia hemisphaericaexon
TCONS_00044658-exon-sc0005952-1575043694:266..495TCONS_00044658-exon-sc0005952-1575043694:266..495Clytia hemisphaericaexon
TCONS_00044658-exon-sc0005952-1510915933:2512..2691TCONS_00044658-exon-sc0005952-1510915933:2512..2691Clytia hemisphaericaexon
TCONS_00044658-exon-sc0005952-1510915933:1523..1677TCONS_00044658-exon-sc0005952-1510915933:1523..1677Clytia hemisphaericaexon
TCONS_00044658-exon-sc0005952-1510915933:938..1018TCONS_00044658-exon-sc0005952-1510915933:938..1018Clytia hemisphaericaexon
TCONS_00044658-exon-sc0005952-1510915933:266..495TCONS_00044658-exon-sc0005952-1510915933:266..495Clytia hemisphaericaexon
TCONS_00044658-exon-sc0005952-1491911889:2512..2691TCONS_00044658-exon-sc0005952-1491911889:2512..2691Clytia hemisphaericaexon
TCONS_00044658-exon-sc0005952-1491911889:1523..1677TCONS_00044658-exon-sc0005952-1491911889:1523..1677Clytia hemisphaericaexon
TCONS_00044658-exon-sc0005952-1491911889:938..1018TCONS_00044658-exon-sc0005952-1491911889:938..1018Clytia hemisphaericaexon
TCONS_00044658-exon-sc0005952-1491911889:266..495TCONS_00044658-exon-sc0005952-1491911889:266..495Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044658-proteinTCONS_00044658-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005952supercontigsc0005952:266..2691 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0791679	0	0	0	0.0865143	0	0	0.0684128	0.169481	0.246753	0	0	0.280364	1.38298	5.88713	45.7036	45.6632	2.41643	0.812772	613.503	572.431	861.221	1047.41	720.589	560.493	0.667923	0.831629	3.69446	13.8628
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008373Saposin
IPR008139SaposinB_dom
IPR008138SapB_2
IPR007856SapB_1
IPR011001Saposin-like
Vocabulary: Cellular Component
TermDefinition
GO:0005764lysosome
Vocabulary: Biological Process
TermDefinition
GO:0006665sphingolipid metabolic process
GO:0006629lipid metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006629 lipid metabolic process
biological_process GO:0006665 sphingolipid metabolic process
cellular_component GO:0005764 lysosome
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044658 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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