TCONS_00044669 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044669
Unique NameTCONS_00044669
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length717

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044669 ID=TCONS_00044669|Name=TCONS_00044669|organism=Clytia hemisphaerica|type=transcript|length=717bp
agaaaatttataaattccTCTACAACTGAGAGCTAACTGACAGCATTCGG
TACCAGGCCTGCGTGTACtgtcaagaaaagaaaaacaacatgATAGCCGA
GACGCGAGCGAAATTTAGATCATAGCCAGAACCAAACAAAACGACGGTGA
GGAAACTGAAGATGATGAATAGAAGAGAAAGATTACAATTTTATGGGttt
aacttgaaaaatcaagaattCAGTGACTTTGACTACTGATGGCTATCTGA
AAATTCTTCAGTCGGTTTGTTATCTTTTGAAACAGATGTTTTTCTCTCAT
GGTAAAATTCTACTATAAATGGCAAACGGTGAAAGTGAACTTGACGTTGG
AAGAAAAGAACTAACATTAGATCGACCTCCATCCCTCAGTAATTCGCCAA
ATTCATCACCAAACAGCTTAAAAAGGGACCTAGCATTGAAGCATGATGAC
TCTCTGATATGCCCTTCACCTTTAACTGTTAATAATGATGATATTCTTCA
ACAAATCAAAGCATCCCAGTCTCTGGACTCAAGCTCTGAAGACATTACTG
AAAATACTTTGAGtgtgaaaaatgaaacaaatgaaaacgATGAAGAAACT
ACTGAGAAAATCCTTGAGCCTTTATTGAATTCAGAACTGAAAGAAGAAAG
AGTAAATGGGTTAATTGATTCAATAAAAGATTCCCCTAATGATgagaaca
aaagaaatgaagaagaA
Run BLAST on NCBI

protein sequence of TCONS_00044669-protein

>TCONS_00044669-protein ID=TCONS_00044669-protein|Name=TCONS_00044669-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MANGESELDVGRKELTLDRPPSLSNSPNSSPNSLKRDLALKHDDSLICPS
PLTVNNDDILQQIKASQSLDSSSEDITENTLSVKNETNENDEETTEKILE
PLLNSELKEERVNGLIDSIKDSPNDENKRNEEE
Run BLAST on NCBI

transcript from alignment at sc0005975:1..717

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044669 ID=TCONS_00044669|Name=TCONS_00044669|organism=Clytia hemisphaerica|type=transcript|length=717bp|location=Sequence derived from alignment at sc0005975:1..717 (Clytia hemisphaerica)
TtcttcttcatttcttttgttctcATCATTAGGGGAATCTTTTATTGAAT
CAATTAACCCATTTACTCTTTCTTCTTTCAGTTCTGAATTCAATAAAGGC
TCAAGGATTTTCTCAGTAGTTTCTTCATcgttttcatttgtttcattttt
cacaCTCAAAGTATTTTCAGTAATGTCTTCAGAGCTTGAGTCCAGAGACT
GGGATGCTTTGATTTGTTGAAGAATATCATCATTATTAACAGTTAAAGGT
GAAGGGCATATCAGAGAGTCATCATGCTTCAATGCTAGGTCCCTTTTTAA
GCTGTTTGGTGATGAATTTGGCGAATTACTGAGGGATGGAGGTCGATCTA
ATGTTAGTTCTTTTCTTCCAACGTCAAGTTCACTTTCACCGTTTGCCATT
TATAGTAGAATTTTACCATGAGAGAAAAACATCTGTTTCAAAAGATAACA
AACCGACTGAAGAATTTTCAGATAGCCATCAGTAGTCAAAGTCACTGaat
tcttgatttttcaagttaaaCCCATAAAATTGTAATCTTTCTCTTCTATT
CATCATCTTCAGTTTCCTCACCGTCGTTTTGTTTGGTTCTGGCTATGATC
TAAATTTCGCTCGCGTCTCGGCTATcatgttgtttttcttttcttgacaG
TACACGCAGGCCTGGTACCGAATGCTGTCAGTTAGCTCTCAGTTGTAGAg
gaatttataaattttct

Coding sequence (CDS) from alignment at sc0005975:1..717

>TCONS_00044669 ID=TCONS_00044669|Name=TCONS_00044669|organism=Clytia hemisphaerica|type=CDS|length=399bp|location=Sequence derived from alignment at sc0005975:1..717 (Clytia hemisphaerica)
TtcttcttcatttcttttgttctcATCATTAGGGGAATCTTTTATTGAAT
CAATTAACCCATTTACTCTTTCTTCTTTCAGTTCTGAATTCAATAAAGGC
TCAAGGATTTTCTCAGTAGTTTCTTCATcgttttcatttgtttcattttt
cacaCTCAAAGTATTTTCAGTAATGTCTTCAGAGCTTGAGTCCAGAGACT
GGGATGCTTTGATTTGTTGAAGAATATCATCATTATTAACAGTTAAAGGT
GAAGGGCATATCAGAGAGTCATCATGCTTCAATGCTAGGTCCCTTTTTAA
GCTGTTTGGTGATGAATTTGGCGAATTACTGAGGGATGGAGGTCGATCTA
ATGTTAGTTCTTTTCTTCCAACGTCAAGTTCACTTTCACCGTTTGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028285XLOC_028285Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044669-exon-sc0005975-1491911889:1..717TCONS_00044669-exon-sc0005975-1491911889:1..717Clytia hemisphaericaexon
TCONS_00044669-exon-sc0005975-1510915933:1..717TCONS_00044669-exon-sc0005975-1510915933:1..717Clytia hemisphaericaexon
TCONS_00044669-exon-sc0005975-1575043694:1..717TCONS_00044669-exon-sc0005975-1575043694:1..717Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044669-proteinTCONS_00044669-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005975supercontigsc0005975:1..717 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.64647	6.80941	3.01439	1.74567	39.4793	26.294	23.6284	30.0208	9.03121	12.7574	12.022	6.71616	7.78532	7.78452	4.88098	6.83727	8.43494	6.68872	5.26826	6.7049	13.3239	11.1155	6.58362	10.0279	21.8224	20.4698	12.6096	11.0563	10.9602	14.5791
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044669 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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