TCONS_00044681 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044681
Unique NameTCONS_00044681
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length361

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044681 ID=TCONS_00044681|Name=TCONS_00044681|organism=Clytia hemisphaerica|type=transcript|length=361bp
gaGTTGAAGATGGATTTTATTTCCCGGACATGCATTACATTTCCGCATTA
CGGTATCAGTACGCCCAAGCTACGGACAGTTTGTCAACTAAAATCACTAT
CCCGCATGATTCAACATACAAGCTTTTTATAGGCTACACGTTACTTACAC
GCAACATTGTCAATGTAGAGCTACGCATGTCATTAGAAGGTTCTTCGGCT
CTTCTTTTCGGTCCTGCATATCCAGGGGCTAGTTTGTTCTTTTGCAATGA
AGAATGTCGTGAAGGATTCCAGTCTAGTGGGAATggtgattttgttttga
aagctgGTGTTTACCAAgtacaaattttttctcaagGATCCAACAATGGC
TTGAAACTGGt
Run BLAST on NCBI

protein sequence of TCONS_00044681-protein

>TCONS_00044681-protein ID=TCONS_00044681-protein|Name=TCONS_00044681-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
VEDGFYFPDMHYISALRYQYAQATDSLSTKITIPHDSTYKLFIGYTLLTR
NIVNVELRMSLEGSSALLFGPAYPGASLFFCNEECREGFQSSGNGDFVLK
AGVYQVQIFSQGSNNGLKL
Run BLAST on NCBI

transcript from alignment at sc0006002:928..2274+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044681 ID=TCONS_00044681|Name=TCONS_00044681|organism=Clytia hemisphaerica|type=transcript|length=1347bp|location=Sequence derived from alignment at sc0006002:928..2274+ (Clytia hemisphaerica)
gaGTTGAAGATGGATTTTATTTCCCGGACATGCATTACATTTCCGCATTA
CGGTATCAGTACGCCCAAGCTACGGTAAGCAGTGTCGCCATTATGGTTTT
TAATATAGGTGACGTAATACTGTGAGTAGGAAAAGTTTAAACTGttggtt
ttcttttttgtttatcgAATCAAATACAATAAAAGTCAGCGCCGTAGGAA
GCAATTTGATATCGGGGTGGGGGCATAAGTTCAGTGACACCGTGAAAGCT
AGCCATGGTTTGACCCGAGGGTGGGGGGATTTTGAGATCTAGAGCTCTAA
ATGGCTAAAAACAcactcaaaaaactaaaataattcgaataaaggcaaaa
tattccattttatgaaaaaaatcacttttaaaaaaattattgaggGGTCT
AAGCTACCCCTAGCAATCCCCCCGGTAGCTATGGCACTGAAATGATAATG
GCCTCCCCGACATCAAATCGTCAATCAACCTTTACTGCCATGTCAAATAT
CAGGGCATAAACCCAATCACAGATACGAACTTTGTGACATTATTTGACCT
TTGTTAGAACTCAGTTCCCAAGCCCTGGTAACTGTTTAGGGTTGATATTT
GTATATTCTCAAGTTCAATAGAACTCTTTATTTCTTTATGAAGTAATGGA
CTGttccaaaaaatttccatacagggggtggacgaaccttttcaagtcaa
aacgaatatcttggaaatgtgtggatactccctggaaaatagcaaaattt
gcaaaaaagatCCTGAAAAAATTATCTTCATCTCTTAAAGTGAGGTTGGA
CAAACTAATATCAGTTGTTTATCCCCTGGAAGTTTAAGAATagtttttta
ccccctggaaacaTGAAAAGCACTTCCTTAGAattcctggaaattcttct
caatTTATCCTctggaaaagttcgtccaccATCCTGTATGGTTAAAAAAT
GGAATGGTCCAATCGGCATAGCATTTTTCCGTTACTTAATATTTTTGCGT
TTGGAGGATCAATTTTATAAAGATCTATCGGCAACGTTCCATTTTTTTGT
TCACCTACAGGACAGTTTGTCAACTAAAATCACTATCCCGCATGATTCAA
CATACAAGCTTTTTATAGGCTACACGTTACTTACACGCAACATTGTCAAT
GTAGAGCTACGCATGTCATTAGAAGGTTCTTCGGCTCTTCTTTTCGGTCC
TGCATATCCAGGGGCTAGTTTGTTCTTTTGCAATGAAGAATGTCGTGAAG
GATTCCAGTCTAGTGGGAATggtgattttgttttgaaagctgGTGTTTAC
CAAgtacaaattttttctcaagGATCCAACAATGGCTTGAAACTGGt

Coding sequence (CDS) from alignment at sc0006002:928..2274+

>TCONS_00044681 ID=TCONS_00044681|Name=TCONS_00044681|organism=Clytia hemisphaerica|type=CDS|length=714bp|location=Sequence derived from alignment at sc0006002:928..2274+ (Clytia hemisphaerica)
GTTGAAGATGGATTTTATTTCCCGGACATGCATTACATTTCCGCATTACG
GTATCAGTACGCCCAAGCTACGGACAGTTTGTCAACTAAAATCACTATCC
CGCATGATTCAACATACAAGCTTTTTATAGGCTACACGTTACTTACACGC
AACATTGTCAATGTAGAGCTACGCATGTCATTAGAAGGTTCTTCGGCTCT
TCTTTTCGGTCCTGCATATCCAGGGGCTAGTTTGTTCTTTTGCAATGAAG
AATGTCGTGAAGGATTCCAGTCTAGTGGGAATggtgattttgttttgaaa
gctgGTGTTTACCAAgtacaaattttttctcaagGATCCAACAATGGCTT
GAAACTGGTTGAAGATGGATTTTATTTCCCGGACATGCATTACATTTCCG
CATTACGGTATCAGTACGCCCAAGCTACGGACAGTTTGTCAACTAAAATC
ACTATCCCGCATGATTCAACATACAAGCTTTTTATAGGCTACACGTTACT
TACACGCAACATTGTCAATGTAGAGCTACGCATGTCATTAGAAGGTTCTT
CGGCTCTTCTTTTCGGTCCTGCATATCCAGGGGCTAGTTTGTTCTTTTGC
AATGAAGAATGTCGTGAAGGATTCCAGTCTAGTGGGAATggtgattttgt
tttgaaagctgGTGTTTACCAAgtacaaattttttctcaagGATCCAACA
ATGGCTTGAAACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028296XLOC_028296Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044681-proteinTCONS_00044681-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044681-exon-sc0006002-1491911889:928..1001TCONS_00044681-exon-sc0006002-1491911889:928..1001Clytia hemisphaericaexon
TCONS_00044681-exon-sc0006002-1510915933:928..1001TCONS_00044681-exon-sc0006002-1510915933:928..1001Clytia hemisphaericaexon
TCONS_00044681-exon-sc0006002-1575043694:928..1001TCONS_00044681-exon-sc0006002-1575043694:928..1001Clytia hemisphaericaexon
TCONS_00044681-exon-sc0006002-1491911889:1988..2274TCONS_00044681-exon-sc0006002-1491911889:1988..2274Clytia hemisphaericaexon
TCONS_00044681-exon-sc0006002-1510915933:1988..2274TCONS_00044681-exon-sc0006002-1510915933:1988..2274Clytia hemisphaericaexon
TCONS_00044681-exon-sc0006002-1575043694:1988..2274TCONS_00044681-exon-sc0006002-1575043694:1988..2274Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006002supercontigsc0006002:928..2274 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.314761	0	0.709655	0	0.360682	1.14993	3.87939	0.232042	5.67482	3.90786	2.35892	5.96799	1.15113	3.01093	0.940511	0	2.75436	3.40231	0.819318	0.289124	1.9312	2.24202	0.424424	0.455408	0	0.388701
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044681 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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