TCONS_00044722 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044722
Unique NameTCONS_00044722
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length640

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044722 ID=TCONS_00044722|Name=TCONS_00044722|organism=Clytia hemisphaerica|type=transcript|length=640bp
TCCGCTCAATGATTTTTATCAACAACAACCCCAATACCAACAACACTTTC
CGATCGAACCACGACAACAACAATTTCCAAACGAACACCAACAACAATTT
CCAATCGAACTACTACAACAACACTTTCCAATCGAACCACGACAACAACA
ATTTCCAAACGAACACCAACAACACTCTCCAATAGAACCACTACAACAAC
ACTCTCCAATAGAACCACTACAACAACACTTTCCAATCGAACCACGACAA
AACCCAATCGAACAACAACCAAGCCCAATCGAACAACCATCCATACAGCT
TACAACAAACGATGATAATTGTCTAGATCTACTAAAACTCCTTGAGATAG
AAATGGAATTTCTCCCAGTTGACATGGTAGAAGAGTATTTTACGAAAATG
ACTGATCAAGATTCAGTAGAGGAGCAGTTTGCGAAAATAGAAGCTTCGCA
AGAGCAAGAAATAGACTTCACTATTGATAGTATActataatttattttca
ttttgatttatatttacTTATCGTTTTCGTTTCTTGTCTCTCTCCACTTT
TTTATTGCGCTTTTTAATTTAAGAATCAACTtaagtaaaagaaaattatt
aaaccCTGTGAACGCACTATAAGTTTTTTCATAGCTGggt
Run BLAST on NCBI

protein sequence of TCONS_00044722-protein

>TCONS_00044722-protein ID=TCONS_00044722-protein|Name=TCONS_00044722-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
PLNDFYQQQPQYQQHFPIEPRQQQFPNEHQQQFPIELLQQHFPIEPRQQQ
FPNEHQQHSPIEPLQQHSPIEPLQQHFPIEPRQNPIEQQPSPIEQPSIQL
TTNDDNCLDLLKLLEIEMEFLPVDMVEEYFTKMTDQDSVEEQFAKIEASQ
EQEIDFTIDSIL
Run BLAST on NCBI

transcript from alignment at sc0006078:1325..1964

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044722 ID=TCONS_00044722|Name=TCONS_00044722|organism=Clytia hemisphaerica|type=transcript|length=640bp|location=Sequence derived from alignment at sc0006078:1325..1964 (Clytia hemisphaerica)
accCAGCTATGAAAAAACTTATAGTGCGTTCACAGggtttaataattttc
ttttacttaAGTTGATTCTTAAATTAAAAAGCGCAATAAAAAAGTGGAGA
GAGACAAGAAACGAAAACGATAAgtaaatataaatcaaaatgaaaataaa
ttatagTATACTATCAATAGTGAAGTCTATTTCTTGCTCTTGCGAAGCTT
CTATTTTCGCAAACTGCTCCTCTACTGAATCTTGATCAGTCATTTTCGTA
AAATACTCTTCTACCATGTCAACTGGGAGAAATTCCATTTCTATCTCAAG
GAGTTTTAGTAGATCTAGACAATTATCATCGTTTGTTGTAAGCTGTATGG
ATGGTTGTTCGATTGGGCTTGGTTGTTGTTCGATTGGGTTTTGTCGTGGT
TCGATTGGAAAGTGTTGTTGTAGTGGTTCTATTGGAGAGTGTTGTTGTAG
TGGTTCTATTGGAGAGTGTTGTTGGTGTTCGTTTGGAAATTGTTGTTGTC
GTGGTTCGATTGGAAAGTGTTGTTGTAGTAGTTCGATTGGAAATTGTTGT
TGGTGTTCGTTTGGAAATTGTTGTTGTCGTGGTTCGATCGGAAAGTGTTG
TTGGTATTGGGGTTGTTGTTGATAAAAATCATTGAGCGGA

Coding sequence (CDS) from alignment at sc0006078:1325..1964

>TCONS_00044722 ID=TCONS_00044722|Name=TCONS_00044722|organism=Clytia hemisphaerica|type=CDS|length=489bp|location=Sequence derived from alignment at sc0006078:1325..1964 (Clytia hemisphaerica)
ttatagTATACTATCAATAGTGAAGTCTATTTCTTGCTCTTGCGAAGCTT
CTATTTTCGCAAACTGCTCCTCTACTGAATCTTGATCAGTCATTTTCGTA
AAATACTCTTCTACCATGTCAACTGGGAGAAATTCCATTTCTATCTCAAG
GAGTTTTAGTAGATCTAGACAATTATCATCGTTTGTTGTAAGCTGTATGG
ATGGTTGTTCGATTGGGCTTGGTTGTTGTTCGATTGGGTTTTGTCGTGGT
TCGATTGGAAAGTGTTGTTGTAGTGGTTCTATTGGAGAGTGTTGTTGTAG
TGGTTCTATTGGAGAGTGTTGTTGGTGTTCGTTTGGAAATTGTTGTTGTC
GTGGTTCGATTGGAAAGTGTTGTTGTAGTAGTTCGATTGGAAATTGTTGT
TGGTGTTCGTTTGGAAATTGTTGTTGTCGTGGTTCGATCGGAAAGTGTTG
TTGGTATTGGGGTTGTTGTTGATAAAAATCATTGAGCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028337XLOC_028337Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044722-proteinTCONS_00044722-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044722-exon-sc0006078-1491911889:1325..1964TCONS_00044722-exon-sc0006078-1491911889:1325..1964Clytia hemisphaericaexon
TCONS_00044722-exon-sc0006078-1510915933:1325..1964TCONS_00044722-exon-sc0006078-1510915933:1325..1964Clytia hemisphaericaexon
TCONS_00044722-exon-sc0006078-1575043694:1325..1964TCONS_00044722-exon-sc0006078-1575043694:1325..1964Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006078supercontigsc0006078:1325..1964 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.207598	0.263156	0	0.0990757	0	0.25776	0	0	0	0.227413	0.0467411	0.100321	0.185381	0	0	0	0	0.116459	0	0	0	0	0	0	0.0913632	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044722 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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