TCONS_00044780 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044780
Unique NameTCONS_00044780
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length442

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044780 ID=TCONS_00044780|Name=TCONS_00044780|organism=Clytia hemisphaerica|type=transcript|length=442bp
AAGACATAGAAGAAAACGAATTGAAAGCACTTTCATATAGGACCAACAAT
TTTGCAACTATGGAAATCCTAAGTGGTGGTTTGGAACGATTAGGACCTCG
AAGTTATGCTGGTAAAGGCTTTTATATCGGTTTTATTTGGTCAACAAGGT
TGGTATATGCTGTCCAAGGCGACTTTGGTTTATTTGAAGGATCCACATAC
GCATCTCATGCAGCTCATTACGAAATAACAATGGTATATAACCAAATAGA
AGATAGCGTTAAACTTTATCGTAATGGTGCCTTAGTATCCACAGCAACTA
AGATTCACAACATATCGTGCAAAGCATTACCGCCAACATTTGCTGATTAT
TTGGTAGTTGGGTCACGTTACTCATACATTAAACGTTACTCTTCTGGATA
TTTCTCCAATGTCAAATTTTGGAGACATCCAATGAATACGGA
Run BLAST on NCBI

protein sequence of TCONS_00044780-protein

>TCONS_00044780-protein ID=TCONS_00044780-protein|Name=TCONS_00044780-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
DIEENELKALSYRTNNFATMEILSGGLERLGPRSYAGKGFYIGFIWSTRL
VYAVQGDFGLFEGSTYASHAAHYEITMVYNQIEDSVKLYRNGALVSTATK
IHNISCKALPPTFADYLVVGSRYSYIKRYSSGYFSNVKFWRHPMNT
Run BLAST on NCBI

transcript from alignment at sc0006201:292..733

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044780 ID=TCONS_00044780|Name=TCONS_00044780|organism=Clytia hemisphaerica|type=transcript|length=442bp|location=Sequence derived from alignment at sc0006201:292..733 (Clytia hemisphaerica)
TCCGTATTCATTGGATGTCTCCAAAATTTGACATTGGAGAAATATCCAGA
AGAGTAACGTTTAATGTATGAGTAACGTGACCCAACTACCAAATAATCAG
CAAATGTTGGCGGTAATGCTTTGCACGATATGTTGTGAATCTTAGTTGCT
GTGGATACTAAGGCACCATTACGATAAAGTTTAACGCTATCTTCTATTTG
GTTATATACCATTGTTATTTCGTAATGAGCTGCATGAGATGCGTATGTGG
ATCCTTCAAATAAACCAAAGTCGCCTTGGACAGCATATACCAACCTTGTT
GACCAAATAAAACCGATATAAAAGCCTTTACCAGCATAACTTCGAGGTCC
TAATCGTTCCAAACCACCACTTAGGATTTCCATAGTTGCAAAATTGTTGG
TCCTATATGAAAGTGCTTTCAATTCGTTTTCTTCTATGTCTT

Coding sequence (CDS) from alignment at sc0006201:292..733

>TCONS_00044780 ID=TCONS_00044780|Name=TCONS_00044780|organism=Clytia hemisphaerica|type=CDS|length=438bp|location=Sequence derived from alignment at sc0006201:292..733 (Clytia hemisphaerica)
CGTATTCATTGGATGTCTCCAAAATTTGACATTGGAGAAATATCCAGAAG
AGTAACGTTTAATGTATGAGTAACGTGACCCAACTACCAAATAATCAGCA
AATGTTGGCGGTAATGCTTTGCACGATATGTTGTGAATCTTAGTTGCTGT
GGATACTAAGGCACCATTACGATAAAGTTTAACGCTATCTTCTATTTGGT
TATATACCATTGTTATTTCGTAATGAGCTGCATGAGATGCGTATGTGGAT
CCTTCAAATAAACCAAAGTCGCCTTGGACAGCATATACCAACCTTGTTGA
CCAAATAAAACCGATATAAAAGCCTTTACCAGCATAACTTCGAGGTCCTA
ATCGTTCCAAACCACCACTTAGGATTTCCATAGTTGCAAAATTGTTGGTC
CTATATGAAAGTGCTTTCAATTCGTTTTCTTCTATGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028391XLOC_028391Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044780-proteinTCONS_00044780-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044780-exon-sc0006201-1491911889:292..733TCONS_00044780-exon-sc0006201-1491911889:292..733Clytia hemisphaericaexon
TCONS_00044780-exon-sc0006201-1510915933:292..733TCONS_00044780-exon-sc0006201-1510915933:292..733Clytia hemisphaericaexon
TCONS_00044780-exon-sc0006201-1575043694:292..733TCONS_00044780-exon-sc0006201-1575043694:292..733Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006201supercontigsc0006201:292..733 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.152265	0	0	0.168669	0	0	0.195761	0	0	0	0	0.405631	1.01267	1.05166	0	0.278358	0	0	0.647444	3.21814	0.294437	0.430848	0.349168	0.158722	0.16348	1.02132	0.208786	0	0.169002	0.51656
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013320ConA-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044780 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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