TCONS_00044784 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044784
Unique NameTCONS_00044784
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length475

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044784 ID=TCONS_00044784|Name=TCONS_00044784|organism=Clytia hemisphaerica|type=transcript|length=475bp
AAGGAAGTTATCAAAGATGCCTGGCGCGAAGAGGGAGCAGAAGAGGCAGA
CAAGAGAAGACGTGCACCAAATGTCATCGTTCATGGTTTACCAGAGAAAG
ACGAAGAAAATGACAAAAGTTGGGCATCAGATTTTATCAAGGATACCCAT
GCCCGAGCTAACATTCAGCGTGTCAGAAGATTAGGCGTAGCAACTGGAAA
TAAAAAGCGACCCTTGTTGCTATCACTCAAAAATGAACAAGAAAAATGGA
TTGTTATCGGAAATTTAACAAGTTTAAAGGGATTAGAAAACTACAAAGGT
ATCAGTATTACAGAGGACCTAACACCTGCACAACGGAAAGTATATAAGGA
ATTATCGAACGATGCAAAAAAGCTAAACTCTGAGGAAAAATCTCAAACTG
AAATTTATCGAGTCAGAGGTGATACAAAAAACGGTTTCGCTGTAAAGAag
ctgaaaatcaaaaaacaacaataga
Run BLAST on NCBI

protein sequence of TCONS_00044784-protein

>TCONS_00044784-protein ID=TCONS_00044784-protein|Name=TCONS_00044784-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
KEVIKDAWREEGAEEADKRRRAPNVIVHGLPEKDEENDKSWASDFIKDTH
ARANIQRVRRLGVATGNKKRPLLLSLKNEQEKWIVIGNLTSLKGLENYKG
ISITEDLTPAQRKVYKELSNDAKKLNSEEKSQTEIYRVRGDTKNGFAVKK
LKIKKQQ
Run BLAST on NCBI

transcript from alignment at sc0006207:1662..2136

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044784 ID=TCONS_00044784|Name=TCONS_00044784|organism=Clytia hemisphaerica|type=transcript|length=475bp|location=Sequence derived from alignment at sc0006207:1662..2136 (Clytia hemisphaerica)
tctattgttgttttttgattttcagctTCTTTACAGCGAAACCGTTTTTT
GTATCACCTCTGACTCGATAAATTTCAGTTTGAGATTTTTCCTCAGAGTT
TAGCTTTTTTGCATCGTTCGATAATTCCTTATATACTTTCCGTTGTGCAG
GTGTTAGGTCCTCTGTAATACTGATACCTTTGTAGTTTTCTAATCCCTTT
AAACTTGTTAAATTTCCGATAACAATCCATTTTTCTTGTTCATTTTTGAG
TGATAGCAACAAGGGTCGCTTTTTATTTCCAGTTGCTACGCCTAATCTTC
TGACACGCTGAATGTTAGCTCGGGCATGGGTATCCTTGATAAAATCTGAT
GCCCAACTTTTGTCATTTTCTTCGTCTTTCTCTGGTAAACCATGAACGAT
GACATTTGGTGCACGTCTTCTCTTGTCTGCCTCTTCTGCTCCCTCTTCGC
GCCAGGCATCTTTGATAACTTCCTT

Coding sequence (CDS) from alignment at sc0006207:1662..2136

>TCONS_00044784 ID=TCONS_00044784|Name=TCONS_00044784|organism=Clytia hemisphaerica|type=CDS|length=474bp|location=Sequence derived from alignment at sc0006207:1662..2136 (Clytia hemisphaerica)
ctattgttgttttttgattttcagctTCTTTACAGCGAAACCGTTTTTTG
TATCACCTCTGACTCGATAAATTTCAGTTTGAGATTTTTCCTCAGAGTTT
AGCTTTTTTGCATCGTTCGATAATTCCTTATATACTTTCCGTTGTGCAGG
TGTTAGGTCCTCTGTAATACTGATACCTTTGTAGTTTTCTAATCCCTTTA
AACTTGTTAAATTTCCGATAACAATCCATTTTTCTTGTTCATTTTTGAGT
GATAGCAACAAGGGTCGCTTTTTATTTCCAGTTGCTACGCCTAATCTTCT
GACACGCTGAATGTTAGCTCGGGCATGGGTATCCTTGATAAAATCTGATG
CCCAACTTTTGTCATTTTCTTCGTCTTTCTCTGGTAAACCATGAACGATG
ACATTTGGTGCACGTCTTCTCTTGTCTGCCTCTTCTGCTCCCTCTTCGCG
CCAGGCATCTTTGATAACTTCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028395XLOC_028395Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044784-exon-sc0006207-1491911889:1662..2136TCONS_00044784-exon-sc0006207-1491911889:1662..2136Clytia hemisphaericaexon
TCONS_00044784-exon-sc0006207-1510915933:1662..2136TCONS_00044784-exon-sc0006207-1510915933:1662..2136Clytia hemisphaericaexon
TCONS_00044784-exon-sc0006207-1575043694:1662..2136TCONS_00044784-exon-sc0006207-1575043694:1662..2136Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044784-proteinTCONS_00044784-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006207supercontigsc0006207:1662..2136 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.1578	1.6908	2.96142	1.51316	1.07918	1.20325	1.88622	1.76586	0.561963	2.08824	1.21614	0.532962	1.06444	1.01331	0	0.243825	0.400496	0.51312	0.283561	0	0.257909	0.566095	0.30585	0.506616	3.86637	2.42823	0	0	0	0.30165
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044784 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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