TCONS_00044788 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044788
Unique NameTCONS_00044788
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length608

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044788 ID=TCONS_00044788|Name=TCONS_00044788|organism=Clytia hemisphaerica|type=transcript|length=608bp
acactgaGCGCGCAGAGGTTGACAATTAGGAATCCAGAAGTGGCAAAAGG
GGtctccgactctccaactctaacttcagagtaaaaatcagggtcggtcg
gatgacgggaaccaaacaatttttagagATCCGCCTTAcgtcaaaaaaag
gttttgtgcgaacaaaaaaaagttgaaggaagttgaAACTGATTTGCCTA
GATTAAAATAAGCTACAACATCCAACTCAAAACTGAACCTACAGAATATa
tgtttctaaaaaaatctaCAGCACAGCTAAATTCTTTATCTAAAAATCAC
AGaagccaataaaaaaaatttccaagatGCAAGAAATCCAAAAATTATAC
CTGCACATGACCTTGATTTCCATACTTTCCATAGCAAAAGCCAAATAGCT
GCAAGGTGGGAAAAGTCTCCTATCAACCTAAATATATTCATCTTCTCTGT
TtttctataaattaaaaattatcatGAGTGCTCGAATGACCAATCTTACA
AAAGTCTACTCCGAACACTGATTTTGGTTTGTTATTATTCCGCTCTATTG
ATCCACGTTGCACTGATGACAACAAAGTAACTCGGGAAGCTTCTAGCTGT
GATCAAAA
Run BLAST on NCBI

transcript from alignment at sc0006215:1633..2240

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044788 ID=TCONS_00044788|Name=TCONS_00044788|organism=Clytia hemisphaerica|type=transcript|length=608bp|location=Sequence derived from alignment at sc0006215:1633..2240 (Clytia hemisphaerica)
TTTTGATCACAGCTAGAAGCTTCCCGAGTTACTTTGTTGTCATCAGTGCA
ACGTGGATCAATAGAGCGGAATAATAACAAACCAAAATCAGTGTTCGGAG
TAGACTTTTGTAAGATTGGTCATTCGAGCACTCatgataatttttaattt
atagaaaAACAGAGAAGATGAATATATTTAGGTTGATAGGAGACTTTTCC
CACCTTGCAGCTATTTGGCTTTTGCTATGGAAAGTATGGAAATCAAGGTC
ATGTGCAGGTATAATTTTTGGATTTCTTGCatcttggaaattttttttat
tggcttCTGTGATTTTTAGATAAAGAATTTAGCTGTGCTGtagatttttt
tagaaacatATATTCTGTAGGTTCAGTTTTGAGTTGGATGTTGTAGCTTA
TTTTAATCTAGGCAAATCAGTTtcaacttccttcaacttttttttgttcg
cacaaaacctttttttgacgTAAGGCGGATctctaaaaattgtttggttc
ccgtcatccgaccgaccctgatttttactctgaagttagagttggagagt
cggagaCCCCTTTTGCCACTTCTGGATTCCTAATTGTCAACCTCTGCGCG
Ctcagtgt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028399XLOC_028399Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044788-exon-sc0006215-1491911889:1633..2240TCONS_00044788-exon-sc0006215-1491911889:1633..2240Clytia hemisphaericaexon
TCONS_00044788-exon-sc0006215-1510915933:1633..2240TCONS_00044788-exon-sc0006215-1510915933:1633..2240Clytia hemisphaericaexon
TCONS_00044788-exon-sc0006215-1575043694:1633..2240TCONS_00044788-exon-sc0006215-1575043694:1633..2240Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006215supercontigsc0006215:1633..2240 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
66.4808	66.926	24.4822	24.9765	20.4508	19.7272	49.9483	56.9159	125.35	121.953	98.7319	94.9827	51.8519	44.3968	65.0309	66.4169	79.361	67.2453	26.8891	50.8309	68.1737	62.7585	87.2683	94.1703	15.7509	24.2804	65.2248	53.2131	115.96	86.1641
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044788 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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