TCONS_00044818 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044818
Unique NameTCONS_00044818
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length773

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044818 ID=TCONS_00044818|Name=TCONS_00044818|organism=Clytia hemisphaerica|type=transcript|length=773bp
CAGTTTGTTCTCCAACAGGCTCATCTGCATCTTCACCAGAGACACTTTTA
TCAGATTCCTCATCTACATCAGAATTTGTTTCCTCCATAACATTTGTAGC
ATTTTCTACCATTGACACGTCATTAATGTTATTAATATCAATTTGTATAT
CATGATAGAGAGgattgttttctttcaaataactGAGTATACGTTGAATG
AAATCAGGCCTGATTGGTTCAAAAACAACATGTCCTCTATATTCTAGTTT
TCTTTTCAGACCGTTATCAGTTGTACTTCTTGGTAACGTATTAGCAACAT
CTTCAACATTGATTGGCACATTACAAATAGACCCTTTAAGTTTTGGAAAC
TGGCCTTTAGGCATTATTGCaatctttttgaataaaattctgCGCGAAAT
GAGAATCTTTTCAAGTCTGCGAAGAGTATGAAATTCTTTTGGTAATTCGT
CAAGCGAAAGCTTGTTTTTGACAGATTGGCAAGGTAAGTCTCCTTTCTTA
AGCTTGTTATGACATGTCTTGCAAATGTACAACTGACCATCAAAAGAAAC
AACTTCAGAATAATAATCTTCTTCTGGCATGNTCCTTTCTTAAGCTTGTT
ATGACATGTCTTGCAAATGTACAACTGACCATCAAAAGAAACAACTTCAG
AATAATAATCTTCTTCTGGCATGTCATACTTATCAGCAGAATATTTGATA
ACAGTTTGTCGATAAAGACATCTATTGCAACAAACACATATGTAAAATGG
ACCTTCATTAAcaagttttataa
Run BLAST on NCBI

protein sequence of TCONS_00044818-protein

>TCONS_00044818-protein ID=TCONS_00044818-protein|Name=TCONS_00044818-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
MPEEDYYSEVVSFDGQLYICKTCHNKLKKGDLPCQSVKNKLSLDELPKEF
HTLRRLEKILISRRILFKKIAIMPKGQFPKLKGSICNVPINVEDVANTLP
RSTTDNGLKRKLEYRGHVVFEPIRPDFIQRILSYLKENNPLYHDIQIDIN
NINDVSMVENATNVMEETNSDVDEESDKSVSGEDADEPVGEQT
Run BLAST on NCBI

transcript from alignment at sc0006271:1371..2143

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044818 ID=TCONS_00044818|Name=TCONS_00044818|organism=Clytia hemisphaerica|type=transcript|length=773bp|location=Sequence derived from alignment at sc0006271:1371..2143 (Clytia hemisphaerica)
ttataaaacttgTTAATGAAGGTCCATTTTACATATGTGTTTGTTGCAAT
AGATGTCTTTATCGACAAACTGTTATCAAATATTCTGCTGATAAGTATGA
CATGCCAGAAGAAGATTATTATTCTGAAGTTGTTTCTTTTGATGGTCAGT
TGTACATTTGCAAGACATGTCATAACAAGCTTAAGAAAGGANCATGCCAG
AAGAAGATTATTATTCTGAAGTTGTTTCTTTTGATGGTCAGTTGTACATT
TGCAAGACATGTCATAACAAGCTTAAGAAAGGAGACTTACCTTGCCAATC
TGTCAAAAACAAGCTTTCGCTTGACGAATTACCAAAAGAATTTCATACTC
TTCGCAGACTTGAAAAGATTCTCATTTCGCGcagaattttattcaaaaag
attGCAATAATGCCTAAAGGCCAGTTTCCAAAACTTAAAGGGTCTATTTG
TAATGTGCCAATCAATGTTGAAGATGTTGCTAATACGTTACCAAGAAGTA
CAACTGATAACGGTCTGAAAAGAAAACTAGAATATAGAGGACATGTTGTT
TTTGAACCAATCAGGCCTGATTTCATTCAACGTATACTCagttatttgaa
agaaaacaatcCTCTCTATCATGATATACAAATTGATATTAATAACATTA
ATGACGTGTCAATGGTAGAAAATGCTACAAATGTTATGGAGGAAACAAAT
TCTGATGTAGATGAGGAATCTGATAAAAGTGTCTCTGGTGAAGATGCAGA
TGAGCCTGTTGGAGAACAAACTG

Coding sequence (CDS) from alignment at sc0006271:1371..2143

>TCONS_00044818 ID=TCONS_00044818|Name=TCONS_00044818|organism=Clytia hemisphaerica|type=CDS|length=579bp|location=Sequence derived from alignment at sc0006271:1371..2143 (Clytia hemisphaerica)
ATGCCAGAAGAAGATTATTATTCTGAAGTTGTTTCTTTTGATGGTCAGTT
GTACATTTGCAAGACATGTCATAACAAGCTTAAGAAAGGAGACTTACCTT
GCCAATCTGTCAAAAACAAGCTTTCGCTTGACGAATTACCAAAAGAATTT
CATACTCTTCGCAGACTTGAAAAGATTCTCATTTCGCGcagaattttatt
caaaaagattGCAATAATGCCTAAAGGCCAGTTTCCAAAACTTAAAGGGT
CTATTTGTAATGTGCCAATCAATGTTGAAGATGTTGCTAATACGTTACCA
AGAAGTACAACTGATAACGGTCTGAAAAGAAAACTAGAATATAGAGGACA
TGTTGTTTTTGAACCAATCAGGCCTGATTTCATTCAACGTATACTCagtt
atttgaaagaaaacaatcCTCTCTATCATGATATACAAATTGATATTAAT
AACATTAATGACGTGTCAATGGTAGAAAATGCTACAAATGTTATGGAGGA
AACAAATTCTGATGTAGATGAGGAATCTGATAAAAGTGTCTCTGGTGAAG
ATGCAGATGAGCCTGTTGGAGAACAAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028427XLOC_028427Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044818-proteinTCONS_00044818-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044818-exon-sc0006271-1491911889:1371..2143TCONS_00044818-exon-sc0006271-1491911889:1371..2143Clytia hemisphaericaexon
TCONS_00044818-exon-sc0006271-1510915933:1371..2143TCONS_00044818-exon-sc0006271-1510915933:1371..2143Clytia hemisphaericaexon
TCONS_00044818-exon-sc0006271-1575043694:1371..2143TCONS_00044818-exon-sc0006271-1575043694:1371..2143Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006271supercontigsc0006271:1371..2143 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.728295	0.528537	0.275619	0.222954	1.89028	0.490546	2.64162	2.13731	0.809129	1.61744	0.976189	0.470436	0.376632	1.07507	0.76713	0.804413	1.02478	0.936395	1.08431	0.26758	0.950107	0.801562	0.470978	0.254168	0.769919	2.0657	0.445498	0.514815	0.14514	0.0400053
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044818 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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