TCONS_00044849 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044849
Unique NameTCONS_00044849
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1287

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044849 ID=TCONS_00044849|Name=TCONS_00044849|organism=Clytia hemisphaerica|type=transcript|length=1287bp
TGGGCGAACGAAGAATGCCATTTCAACGCGCGGAAAGGGATCGGCGTTGG
AGATACGAGCAATTCATGCGGCTTCGATGGCACCAGGTGTAAAGTATGGA
GTGGTCCTTCCGTCGATGTCGCCATGGAGAATGATTATGGATTGTAAGCA
CTTGTCTTTCTATTCCGATGTTCATAAGTTTCCAACCCATCACTTGTATT
GTTTTGTATGCTTTTTAAATCTCCTTTTGTGCACTAGGGCGGAAAGTAGA
GAACGAAAATGgtgattatttttcaaaatcgaaaCTCAAATATAGGGAAG
TACTTTTatacacaaatatatttttaatacTGACAACTTGCTTCTACAAG
ATCTTGGCAGATTGGTGACGTATTAAGCGTGTTGTTGTCATGGAGTGGAG
TGGTGTCTTTCTGGTTGAATGGCAAGGATCTTGGAGCAGCTCTCAAAAAT
GTAGACACATCTAAACATTGGTACCCTGCTGCTTCCCTTTCCATCGATCA
ACAGTGTTCTTTCATCTTTGAAGAATCCCAAATGAAaCACAAAAAGACCA
CATTCGTCAGCATCGAAGAAGtttatcaacaattcaaaaagCAACCTTCA
AGCATGGTTTGTTCAACACAAAACGTCATCTCTCAAACGAGAAGCCTTAC
AAAAGGTATGCGACCAGAGGTGGCGTATTTCTTCGAAGTTGATTTGACGC
ACATGAAGGACATTTCCATCATTTCTATCGGTTATACATGCTGCGGAAAA
GAAAGCCAGCCAATCACAATCAAAATATCCATGGGATTCTTGAAGAGTGT
CAAAGAACGAGACGTCTTGGGCTGTGGGTTGATTCTGCAACCTGTCAAAC
TAATTTTTCTTACTAAAGGGACATCTGTTATTTGGGAGATGGCGCTCGCT
GAATATCTTGATGTTGAAAAGTTTTCTGATGAACGGATTCTTCAATTGCT
CCCTTTTGTCAACGTGGAGAATGTGCTGATGAACGTCGGACAAAGTTGTT
TTGTTTACGAAGCGGCAAACCTCAACAAGTCCAAACAGAAATTCCTCAGC
TTTGTGCTTAGTTTGATCGATAaggaagaaaaacaatgatttttttattt
ttttatttagaagaTAAATATGATTGATTGTGTTCCATTAAGCGAGTGAA
ATTACTATTGAGGTGTCGCTCGTTCGATTTCTTTTCGAATGAGATTtgtg
tttttgtattttattttcatatggatttataactttttataatttttatt
tttaatttcagaaGAATGATTTCTTTACTCGTTTCAT
Run BLAST on NCBI

transcript from alignment at sc0006315:2..1519-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044849 ID=TCONS_00044849|Name=TCONS_00044849|organism=Clytia hemisphaerica|type=transcript|length=1518bp|location=Sequence derived from alignment at sc0006315:2..1519- (Clytia hemisphaerica)
TGGGCGAACGAAGAATGCCATTTCAACGCGCGGAAAGGGATCGGCGTTGG
AGATACGAGCAATTCATGCGGCTTCGATGGCACCAGGTGTAAAGTATGGA
GTGGTCCTTCCGTCGATGTCGCCATGGAGAATGATTATGGATTGTAAGCA
CTTGTCTTTCTATTCCGATGTTCATAAGTTTCCAACCCATCACTTGTATT
GTTTTGTATGCTTTTTAAATCTCCTTTTGTGCACTAGGGCGGAAAGTAGA
GAACGAAAATGGTGATTATTTTTCAAAATCGAAACTCAAATATAGGGAAG
TACTTTTATACACAAATATATTTTTAATACTGACAACTTGCTTCTACAAG
ATCTTGGCAGATTGGTGACGTATTAAGCGTGTTGTTGTCATGGAGTGGAG
TGGTGTCTTTCTGGTTGAATGGCAAGGATCTTGGAGCAGCTCTCAAAAAT
GTAGACACATCTAAACATTGGTACCCTGCTGCTTCCCTTTCCATCGATCA
ACAGTGTTCTTTCATCTTTGAAGAATCCCAAATGAAGTAAGTAACGATTC
GATCAAAGCTTTCATCGCAAAACACCCTCGTTTGTCTTCAGTTTGGTATT
CCCTCGATTATTGAACTTCTATCGCCACCTTTCTTTTTCTCGAGTGTCCT
GAGCAACTTTTTTTTTCATTTTTCTTCAGACACAAAAAGACCACATTCGT
CAGCATCGAAGAAGTTTATCAACAATTCAAAAAGCAACCTTCAAGCATGG
TTTGTTCAACACAAAACGTCATCTCTCAAACGAGAAGCCTTACAAAAGGT
TCGAAATCTTTTGTTGTCTTTCTCATTTTATCATGAAATAGTGATCTGAC
AATCACTTTCATTGTTTTCTGTCGTTTGCATTTCAGGTATGCGACCAGAG
GTGGCGTATTTCTTCGAAGTTGATTTGACGCACATGAAGGACATTTCCAT
CATTTCTATCGGTTATACATGCTGCGGAAAAGAAAGCCAGCCAATCACAA
TCAAAATATCCATGGGATTCTTGAAGAGTGTCAAAGAACGAGACGTCTTG
GGCTGTGGGTTGATTCTGCAACCTGTCAAACTAATTTTTCTTACTAAAGG
GACATCTGTTATTTGGGAGATGGCGCTCGCTGAATATCTTGATGTTGAAA
AGTTTTCTGATGAACGGATTCTTCAATTGCTCCCTTTTGTCAACGTGGAG
AATGTGCTGATGAACGTCGGACAAAGTTGTTTTGTTTACGAAGCGGCAAA
CCTCAACAAGTCCAAACAGAAATTCCTCAGCTTTGTGCTTAGTTTGATCG
ATAAGGAAGAAAAACAATGATTTTTTTATTTTTTTATTTAGAAGATAAAT
ATGATTGATTGTGTTCCATTAAGCGAGTGAAATTACTATTGAGGTGTCGC
TCGTTCGATTTCTTTTCGAATGAGATTTGTGTTTTTGTATTTTATTTTCA
TATGGATTTATAACTTTTTATAATTTTTATTTTTAATTTCAGAAGAATGA
TTTCTTTACTCGTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028454XLOC_028454Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044849-exon-sc0006315-1575043694:984..1519TCONS_00044849-exon-sc0006315-1575043694:984..1519Clytia hemisphaericaexon
TCONS_00044849-exon-sc0006315-1575043694:722..840TCONS_00044849-exon-sc0006315-1575043694:722..840Clytia hemisphaericaexon
TCONS_00044849-exon-sc0006315-1575043694:2..633TCONS_00044849-exon-sc0006315-1575043694:2..633Clytia hemisphaericaexon
TCONS_00044849-exon-sc0006315-1510915933:984..1519TCONS_00044849-exon-sc0006315-1510915933:984..1519Clytia hemisphaericaexon
TCONS_00044849-exon-sc0006315-1510915933:722..840TCONS_00044849-exon-sc0006315-1510915933:722..840Clytia hemisphaericaexon
TCONS_00044849-exon-sc0006315-1510915933:2..633TCONS_00044849-exon-sc0006315-1510915933:2..633Clytia hemisphaericaexon
TCONS_00044849-exon-sc0006315-1491911889:984..1519TCONS_00044849-exon-sc0006315-1491911889:984..1519Clytia hemisphaericaexon
TCONS_00044849-exon-sc0006315-1491911889:722..840TCONS_00044849-exon-sc0006315-1491911889:722..840Clytia hemisphaericaexon
TCONS_00044849-exon-sc0006315-1491911889:2..633TCONS_00044849-exon-sc0006315-1491911889:2..633Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006315supercontigsc0006315:2..1519 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.888951	0.536881	0.134792	0	0.443575	0.693864	0.214681	1.01188	0.466811	0.595602	0.835048	0.501193	0.527997	0.832081	0.312587	0.277094	0.595434	0.430906	0	0.15476	1.75603	1.95547	0.764617	1.87741	0.171199	2.07286	1.62565	1.24638	0.313997	0.324439
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044849 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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