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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044887 ID=TCONS_00044887|Name=TCONS_00044887|organism=Clytia hemisphaerica|type=transcript|length=1361bp
CCTACAATCGAGGCGGACTGCACCGACAACCGCTGGATAATTTTCTGTGA
TGCTTGGTCCCGCTACAAGGAGATGGCATCGCTAACGTCCGCTACCGAAA
TACGAAATGAGCTTCGATCAGCTTGTTCTCCAAAAATCAACGAGATGCTT
TTCAACTTTGTCGGACCAGACACTTTGAATACCTGTTCTGAGGAAGACCT
AATGGACTTTATAAAATCTGTCGCGGTGAAAACCATACATCCTGAGGTGT
ATCGTCAGCAGTTCTTCACGCTTCGCCAAACAGACTGTGAGAGTATTACT
AACTTTATCTCTCGACTAAAGGCCCAGGCTATGTTATGTGCATTCACCAC
CAAAGGGTCATGTAACCAAAACACTTGCATGGCATCCTTCGCAGAGGACA
TGGTGAAATCTCAACTCATCGCTGGCCTCAGAAACGCATCCCACCAAAGC
AAAATCTTGTCCGAGATGGAAGTACTGAAAACTCTGGAGCAAGTTACTAC
CCGCCTCCTTGCCCTCGAATCGACCGAAAGGGCAACAACACACTTCCGCC
CACCAAGTGAAATCGCACCCATATCAGATCGCGATGCATACCGTCGTGAG
AACAAAAGACCCGACCCTTCgaaatcgaaaaaatgctctggaTGTGGTCA
AGCCCTTCATCCAAAAGGACGATCGTCGTGCCCAGCGTGGGGAAAGAATT
GCAGAAAGTGTGGTAAACCGAACCACTTCGTATCCGTCTGCAGATCTCCG
AGCTCCACTTCGACCAACGGCGTGACGATTGACGATGAACCGACCTCACT
GTTGTCATCTATTCGAGCTGAACAGTTATGACTAGAAGAACACACCAGAC
CCGAGCCACCACCCTTGATGAACGCCACCTTTAGCATAAACAAAAACGCA
TACCAGAAAATCCACCCTCATAAAATTTGGCCCAATCAACCAAAGACAAC
CACCATTGAAGCGATAGCTGACACCGGGGCCCAGACATGTACGGCAGGAA
GCGCTATACTTGACCAAATCGATGGAGCCCGATCATGGCTTTTAAAAACC
AAACATAGACTTAAAGGGGTTAACAACCAACCCCTAGAAATCAAGGGTGC
ACTTCTTGTGACTATAGAGTGCCCCTCCGGCAAAACAAATGAGATTTTAT
ATGTATGTGACAAGGTAAACAGTGTATATTTATCACAGACAACATTAAAG
AAATTAAACATTATTCAGAAAAACTTTCCAACGGCAGTATCCGCGATAAA
TGACGAACAACCAACCGAGATCAAAAACGAGAAAACTGATATCGCACCAT
GTGGATGCCCCAAAAGATCGCAATGCCCACCTACGCCAGAGAAAATCCCC
TTCCCAGCGAC Run BLAST on NCBI protein sequence of TCONS_00044887-protein >TCONS_00044887-protein ID=TCONS_00044887-protein|Name=TCONS_00044887-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
PTIEADCTDNRWIIFCDAWSRYKEMASLTSATEIRNELRSACSPKINEML
FNFVGPDTLNTCSEEDLMDFIKSVAVKTIHPEVYRQQFFTLRQTDCESIT
NFISRLKAQAMLCAFTTKGSCNQNTCMASFAEDMVKSQLIAGLRNASHQS
KILSEMEVLKTLEQVTTRLLALESTERATTHFRPPSEIAPISDRDAYRRE
NKRPDPSKSKKCSGCGQALHPKGRSSCPAWGKNCRKCGKPNHFVSVCRSP
SSTSTNGVTIDDEPTSLLSSIRAEQL Run BLAST on NCBI transcript from alignment at sc0006392:4..1364 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044887 ID=TCONS_00044887|Name=TCONS_00044887|organism=Clytia hemisphaerica|type=transcript|length=1361bp|location=Sequence derived from alignment at sc0006392:4..1364 (Clytia hemisphaerica)
GTCGCTGGGAAGGGGATTTTCTCTGGCGTAGGTGGGCATTGCGATCTTTT
GGGGCATCCACATGGTGCGATATCAGTTTTCTCGTTTTTGATCTCGGTTG
GTTGTTCGTCATTTATCGCGGATACTGCCGTTGGAAAGTTTTTCTGAATA
ATGTTTAATTTCTTTAATGTTGTCTGTGATAAATATACACTGTTTACCTT
GTCACATACATATAAAATCTCATTTGTTTTGCCGGAGGGGCACTCTATAG
TCACAAGAAGTGCACCCTTGATTTCTAGGGGTTGGTTGTTAACCCCTTTA
AGTCTATGTTTGGTTTTTAAAAGCCATGATCGGGCTCCATCGATTTGGTC
AAGTATAGCGCTTCCTGCCGTACATGTCTGGGCCCCGGTGTCAGCTATCG
CTTCAATGGTGGTTGTCTTTGGTTGATTGGGCCAAATTTTATGAGGGTGG
ATTTTCTGGTATGCGTTTTTGTTTATGCTAAAGGTGGCGTTCATCAAGGG
TGGTGGCTCGGGTCTGGTGTGTTCTTCTAGTCATAACTGTTCAGCTCGAA
TAGATGACAACAGTGAGGTCGGTTCATCGTCAATCGTCACGCCGTTGGTC
GAAGTGGAGCTCGGAGATCTGCAGACGGATACGAAGTGGTTCGGTTTACC
ACACTTTCTGCAATTCTTTCCCCACGCTGGGCACGACGATCGTCCTTTTG
GATGAAGGGCTTGACCACAtccagagcattttttcgatttcGAAGGGTCG
GGTCTTTTGTTCTCACGACGGTATGCATCGCGATCTGATATGGGTGCGAT
TTCACTTGGTGGGCGGAAGTGTGTTGTTGCCCTTTCGGTCGATTCGAGGG
CAAGGAGGCGGGTAGTAACTTGCTCCAGAGTTTTCAGTACTTCCATCTCG
GACAAGATTTTGCTTTGGTGGGATGCGTTTCTGAGGCCAGCGATGAGTTG
AGATTTCACCATGTCCTCTGCGAAGGATGCCATGCAAGTGTTTTGGTTAC
ATGACCCTTTGGTGGTGAATGCACATAACATAGCCTGGGCCTTTAGTCGA
GAGATAAAGTTAGTAATACTCTCACAGTCTGTTTGGCGAAGCGTGAAGAA
CTGCTGACGATACACCTCAGGATGTATGGTTTTCACCGCGACAGATTTTA
TAAAGTCCATTAGGTCTTCCTCAGAACAGGTATTCAAAGTGTCTGGTCCG
ACAAAGTTGAAAAGCATCTCGTTGATTTTTGGAGAACAAGCTGATCGAAG
CTCATTTCGTATTTCGGTAGCGGACGTTAGCGATGCCATCTCCTTGTAGC
GGGACCAAGCATCACAGAAAATTATCCAGCGGTTGTCGGTGCAGTCCGCC
TCGATTGTAGG Coding sequence (CDS) from alignment at sc0006392:4..1364 >TCONS_00044887 ID=TCONS_00044887|Name=TCONS_00044887|organism=Clytia hemisphaerica|type=CDS|length=831bp|location=Sequence derived from alignment at sc0006392:4..1364 (Clytia hemisphaerica)
TCATAACTGTTCAGCTCGAATAGATGACAACAGTGAGGTCGGTTCATCGT
CAATCGTCACGCCGTTGGTCGAAGTGGAGCTCGGAGATCTGCAGACGGAT
ACGAAGTGGTTCGGTTTACCACACTTTCTGCAATTCTTTCCCCACGCTGG
GCACGACGATCGTCCTTTTGGATGAAGGGCTTGACCACAtccagagcatt
ttttcgatttcGAAGGGTCGGGTCTTTTGTTCTCACGACGGTATGCATCG
CGATCTGATATGGGTGCGATTTCACTTGGTGGGCGGAAGTGTGTTGTTGC
CCTTTCGGTCGATTCGAGGGCAAGGAGGCGGGTAGTAACTTGCTCCAGAG
TTTTCAGTACTTCCATCTCGGACAAGATTTTGCTTTGGTGGGATGCGTTT
CTGAGGCCAGCGATGAGTTGAGATTTCACCATGTCCTCTGCGAAGGATGC
CATGCAAGTGTTTTGGTTACATGACCCTTTGGTGGTGAATGCACATAACA
TAGCCTGGGCCTTTAGTCGAGAGATAAAGTTAGTAATACTCTCACAGTCT
GTTTGGCGAAGCGTGAAGAACTGCTGACGATACACCTCAGGATGTATGGT
TTTCACCGCGACAGATTTTATAAAGTCCATTAGGTCTTCCTCAGAACAGG
TATTCAAAGTGTCTGGTCCGACAAAGTTGAAAAGCATCTCGTTGATTTTT
GGAGAACAAGCTGATCGAAGCTCATTTCGTATTTCGGTAGCGGACGTTAG
CGATGCCATCTCCTTGTAGCGGGACCAAGCATCACAGAAAATTATCCAGC
GGTTGTCGGTGCAGTCCGCCTCGATTGTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044887-exon-sc0006392-1491911889:4..1364 | TCONS_00044887-exon-sc0006392-1491911889:4..1364 | Clytia hemisphaerica | exon |
| TCONS_00044887-exon-sc0006392-1510915933:4..1364 | TCONS_00044887-exon-sc0006392-1510915933:4..1364 | Clytia hemisphaerica | exon |
| TCONS_00044887-exon-sc0006392-1575043694:4..1364 | TCONS_00044887-exon-sc0006392-1575043694:4..1364 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006392 | supercontig | sc0006392:4..1364 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001878 | Znf_CCHC |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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