TCONS_00044889 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044889
Unique NameTCONS_00044889
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1198

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044889 ID=TCONS_00044889|Name=TCONS_00044889|organism=Clytia hemisphaerica|type=transcript|length=1198bp
CTATGTTTGCTTCATATAGCCATACGTAAAAATTGCGTCTGGAAAGGGTT
AACAACAGTTAAATAACCAATGATTTTAATTTTCCATCAAATAGCCTGAT
GTTGTATCCCGAAACCTGAACTTACtagtttcttttcaaattttcaagga
gTAAGTGTATGTTCCAAGGAAGCACTTCAATGATGTAATGAAGCTACTGC
TAGTTTGTTATTGTCATTTTCGTTGTACAATCCAATCATAACCCATTGAC
CCTTTAAGAAAAGTCTCATCTTTCAAGTTCTACATGTTTATTTACCCAAG
TGTAGCCTTTCACCCTCCCCCTTCTTTACTACGAACTTTAATAGTGACGT
ATTCCATATAAATATTGCTTCACATAATTGTCAAGCATTTTAATCACTCC
TCTTTTGTAAAGAGAAAAGGAAAGCTATTTGCACACTTGGAAATGAGCCA
TTTACATGCACATTGTTTCAAATCTATCTAACTTGAATAATACGCAACAG
ACAATATCAACAACGTCAACTGATTGCTTTGCTTTTTAAAGGAGCGTTGT
GATTATGTTTATGGTTTGATCTGTTCAGActtgtttaaaaacaaactgGT
GGAATGAAATTGCATTTAAAAATCACTGTGTTTTTATATGGAAAGTTTAT
ACAATcagtttgattacaaaaatcaaATGAGATGAAAAACGTGTAGAAAA
CAAAATAACACAAGAGTGTATTAGAAGAGATATGGTTTTAAAAATGCTAG
ACATATGATTGCGATAAATTAATTGTGATTTAAGAGCATTCTCTTTCTCT
TAAAACGCCCCTTTTTGACAACTatgaaatatttgaataatGCCACCTCT
ACTCTCTTAACAACCAAACTCGTTGAAAATGAATGGGAAATCATAATATC
AGaaaaaagctTTGTTATGAGCTTGCCAGATGTGTCACCCAACCCGTCAG
ACATAGTGTGCAATGTAGAGAGAAAGAGAATCAACGAACTGACTGAAGCG
GCCATTGGCTACCATGTTGAGGATTCCACTGTGGATACTTCAACTCACAA
TGGANAAGCGGCCATTGGCTACCATGTTGAGGATTCCACTGTGGATACTT
CAACTCACAATGGAAATGGACATTGCAGCACTGGAATCACCTCCAATGGT
TATCCAAAGGAGTTTGGTAATCTGGATCGAAGGCAGAGAGGTCTGGGT
Run BLAST on NCBI

protein sequence of TCONS_00044889-protein

>TCONS_00044889-protein ID=TCONS_00044889-protein|Name=TCONS_00044889-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MKYLNNATSTLLTTKLVENEWEIIISEKSFVMSLPDVSPNPSDIVCNVER
KRINELTEAAIGYHVEDSTVDTSTHNGXAAIGYHVEDSTVDTSTHNGNGH
CSTGITSNGYPKEFGNLDRRQRGLG
Run BLAST on NCBI

transcript from alignment at sc0006396:126..1900-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044889 ID=TCONS_00044889|Name=TCONS_00044889|organism=Clytia hemisphaerica|type=transcript|length=1775bp|location=Sequence derived from alignment at sc0006396:126..1900- (Clytia hemisphaerica)
CTATGTTTGCTTCATATAGCCATACGTAAAAATTGCGTCTGGAAAGGGTT
AACAACAGTTAAATAACCAATGATTTTAATTTTCCATCAAATAGCCTGAT
GTTGTATCCCGAAACCTGAACTTACTAGTTTCTTTTCAAATTTTCAAGGA
GTAAGTGTATGTTCCAAGGAAGCACTTCAATGATGTAATGAAGCTACTGC
TAGTTTGTTATTGTCATTTTCGTTGTACAATCCAATCATAACCCATTGAC
CCTTTAAGAAAAGTCTCATCTTTCAAGTTCTACATGTTTATTTACCCAAG
TGTAGCCTTTCACCCTCCCCCTTCTTTACTACGAACTTTAATAGTGACGT
ATTCCATATAAATATTGCTTCACATAATTGTCAAGCATTTTAATCACTCC
TCTTTTGTAAAGAGAAAAGGAAAGCTATTTGCACACTTGGAAATGAGCCA
TTTACATGCACATTGTTTCAAATCTATCTAACTTGAATAATACGCAACAG
ACAATATCAACAACGTCAACTGATTGCTTTGCTTTTTAAAGGAGCGTTGT
GATTATGTTTATGGTTTGATCTGTTCAGACTTGTTTAAAAACAAACTGGT
GGAATGAAATTGCATTTAAAAATCACTGTGTTTTTATATGGAAAGTTTAT
ACAATCAGTTTGATTACAAAAATCAAATGAGATGAAAAACGTGTAGAAAA
CAAAATAACACAAGAGTGTATTAGAAGAGATATGGTTTTAAAAATGCTAG
ACATATGATTGCGATAAATTAATTGTGATTTAAGAGCATTCTCTTTCTCT
TAAAACGCCCCTTTTTGACAACTATGAAATATTTGAATAATGCCACCTCT
ACTCTCTTAACAACCAAACTCGTTGAAAATGAATGGGAAATCATAATATC
AGGTATTATTAAGCTTACTTTTTGATAATTATGGTAGTTAGAAAAGAACA
GAGCATATAGTTTATTATTAGTATGTTGTTATGAATGATAATGAGCGTGG
GGTATACAATCTTTTGAGAGAAATATTGTATCTTTTTTTGCATGAAATAC
TGGTTTTTAAGCTAATCTGTAATCTAAGTAGGAGTAACACTTTTATCAGT
ACTGCTAGAATAGGTTTTTGGAAATAGATGTATACTTTTTACCTTACCAT
GGCTCCAATGATGATAATATTACGCTTTCTTCTGAAACACCTGATATTGA
AAGGTTGATAATGGTGTTTGTTTGTGATTTTAAAAGCAATAACCAAGAAA
AAGTCCGTTTTTGTAGGAACCTTTGTACGGTATTTTGCTGAAACTTTTTA
CTTGAAAAAGACACGTAAGAGGTCGAAATATCGTTCACAAAATGAAATGT
GTTATGTTTCATTTTGAATTTTGGTTACACATCACAGGGTTTTCACGTAG
ATATCTCTAGCCTTTTTATAAAACACTTTTCTAAAACTATAAGTATAATA
TAACACGTTTATTTTGATTATTTTTCCAGAAAAAAGCTTTGTTATGAGCT
TGCCAGATGTGTCACCCAACCCGTCAGACATAGTGTGCAATGTAGAGAGA
AAGAGAATCAACGAACTGACTGAAGCGGCCATTGGCTACCATGTTGAGGA
TTCCACTGTGGATACTTCAACTCACAATGGANAAGCGGCCATTGGCTACC
ATGTTGAGGATTCCACTGTGGATACTTCAACTCACAATGGAAATGGACAT
TGCAGCACTGGAATCACCTCCAATGGTTATCCAAAGGAGTTTGGTAATCT
GGATCGAAGGCAGAGAGGTCTGGGT

Coding sequence (CDS) from alignment at sc0006396:126..1900-

>TCONS_00044889 ID=TCONS_00044889|Name=TCONS_00044889|organism=Clytia hemisphaerica|type=CDS|length=750bp|location=Sequence derived from alignment at sc0006396:126..1900- (Clytia hemisphaerica)
AAAAAAGCTTTGTTATGAGCTTGCCAGATGTGTCACCCAACCCGTCAGAC
ATAGTGTGCAATGTAGAGAGAAAGAGAATCAACGAACTGACTGAAGCGGC
CATTGGCTACCATGTTGAGGATTCCACTGTGGATACTTCAACTCACAATG
GANAAGCGGCCATTGGCTACCATGTTGAGGATTCCACTGTGGATACTTCA
ACTCACAATGGAAATGGACATTGCAGCACTGGAATCACCTCCAATGGTTA
TCCAAAGGAGTTTGGTAATCTGGATCGAAGGCAGAGAGGTCTGGGTATGA
AATATTTGAATAATGCCACCTCTACTCTCTTAACAACCAAACTCGTTGAA
AATGAATGGGAAATCATAATATCAGAAAAAAGCTTTGTTATGAGCTTGCC
AGATGTGTCACCCAACCCGTCAGACATAGTGTGCAATGTAGAGAGAAAGA
GAATCAACGAACTGACTGAAGCGGCCATTGGCTACCATGTTGAGGATTCC
ACTGTGGATACTTCAACTCACAATGGANAAGCGGCCATTGGCTACCATGT
TGAGGATTCCACTGTGGATACTTCAACTCACAATGGAAATGGACATTGCA
GCACTGGAATCACCTCCAATGGTTATCCAAAGGAGTTTGGTAATCTGGAT
CGAAGGCAGAGAGGTCTGGGTATGAAATATTTGAATAATGCCACCTCTAC
TCTCTTAACAACCAAACTCGTTGAAAATGAATGGGAAATCATAATATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028488XLOC_028488Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044889-proteinTCONS_00044889-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044889-exon-sc0006396-1575043694:999..1900TCONS_00044889-exon-sc0006396-1575043694:999..1900Clytia hemisphaericaexon
TCONS_00044889-exon-sc0006396-1575043694:126..421TCONS_00044889-exon-sc0006396-1575043694:126..421Clytia hemisphaericaexon
TCONS_00044889-exon-sc0006396-1510915933:999..1900TCONS_00044889-exon-sc0006396-1510915933:999..1900Clytia hemisphaericaexon
TCONS_00044889-exon-sc0006396-1510915933:126..421TCONS_00044889-exon-sc0006396-1510915933:126..421Clytia hemisphaericaexon
TCONS_00044889-exon-sc0006396-1491911889:999..1900TCONS_00044889-exon-sc0006396-1491911889:999..1900Clytia hemisphaericaexon
TCONS_00044889-exon-sc0006396-1491911889:126..421TCONS_00044889-exon-sc0006396-1491911889:126..421Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006396supercontigsc0006396:126..1900 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.411832	0.474619	0.551078	0.414726	1.91858	2.19434	2.06977	3.28957	0.661577	1.13329	0.948275	0.523621	0.871489	0.850375	0.935407	1.09509	0.786954	0.777796	0.915372	0.789159	0.832563	0.688596	0.343417	0.624432	2.00984	2.54711	0.814837	0.657454	0.207773	0.463797
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044889 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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