TCONS_00044920 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044920
Unique NameTCONS_00044920
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length670

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044920 ID=TCONS_00044920|Name=TCONS_00044920|organism=Clytia hemisphaerica|type=transcript|length=670bp
cttcgaaaaggtttttttaatttttgcaagAGTGCAATTACAATATTGTG
CAgttcaaaattacaaaactacgcagagataaaaaaattggcgcagaaat
tacaaaactgaaCATAACATAACGAACTCAAATACGCTTGGCAAATATTA
TTTCTCAAACTATAATCATTTTTAAAGCCTTGTAATTTTCTTAGATTTTA
GTTAGCTTCTCTACAAAGCTACTGTCGTAGAAAATGCGATAAGATTTACG
GAGAAATAAAACAGATCATCACGAAAAAACATTGATGCAATACGTTTCAA
CATTTCACCAGCCGGAGTATAACATTTATTACCATATAATTTTAAGTCGA
CATTTACTATTAAGGTTTTGTCGTTATATATCTTTACTGGCGTAAGCTCG
AATATGGGCGGTGGCGGATCGAGGGCCGGTAGTAGCTATGCCTCTGTGAA
GGAGGGGCTTTATGTTCATATATTTTGTTCTCCATCTTAGCGCATATAAA
ACCACCATTCACCAATTTGTTCTCCCAAATGATCATCGCACTCAAAACGG
GTTACCTGGTTAACGTTAACATGATATGCGCCATAAACAAAAATAGGGTA
TGTAAAAACGCTTCCAATTTGTTCCTGTACTATTAATGATGAACAACTTG
TACTCATCATTAGTGACGTA
Run BLAST on NCBI

transcript from alignment at sc0006469:3..672

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044920 ID=TCONS_00044920|Name=TCONS_00044920|organism=Clytia hemisphaerica|type=transcript|length=670bp|location=Sequence derived from alignment at sc0006469:3..672 (Clytia hemisphaerica)
TACGTCACTAATGATGAGTACAAGTTGTTCATCATTAATAGTACAGGAAC
AAATTGGAAGCGTTTTTACATACCCTATTTTTGTTTATGGCGCATATCAT
GTTAACGTTAACCAGGTAACCCGTTTTGAGTGCGATGATCATTTGGGAGA
ACAAATTGGTGAATGGTGGTTTTATATGCGCTAAGATGGAGAACAAAATA
TATGAACATAAAGCCCCTCCTTCACAGAGGCATAGCTACTACCGGCCCTC
GATCCGCCACCGCCCATATTCGAGCTTACGCCAGTAAAGATATATAACGA
CAAAACCTTAATAGTAAATGTCGACTTAAAATTATATGGTAATAAATGTT
ATACTCCGGCTGGTGAAATGTTGAAACGTATTGCATCAATGTTTTTTCGT
GATGATCTGTTTTATTTCTCCGTAAATCTTATCGCATTTTCTACGACAGT
AGCTTTGTAGAGAAGCTAACTAAAATCTAAGAAAATTACAAGGCTTTAAA
AATGATTATAGTTTGAGAAATAATATTTGCCAAGCGTATTTGAGTTCGTT
ATGTTATGttcagttttgtaatttctgcgccaatttttttatctctgcgt
agttttgtaattttgaacTGCACAATATTGTAATTGCACTcttgcaaaaa
ttaaaaaaaccttttcgaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028518XLOC_028518Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044920-exon-sc0006469-1491911889:3..672TCONS_00044920-exon-sc0006469-1491911889:3..672Clytia hemisphaericaexon
TCONS_00044920-exon-sc0006469-1510915933:3..672TCONS_00044920-exon-sc0006469-1510915933:3..672Clytia hemisphaericaexon
TCONS_00044920-exon-sc0006469-1575043694:3..672TCONS_00044920-exon-sc0006469-1575043694:3..672Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006469supercontigsc0006469:3..672 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.753504	1.59634	0.783689	2.48998	0.908391	0.539421	0.142988	0.372788	0.172819	0.469599	1.04442	1.49153	1.31351	1.52623	0.52776	1.04022	1.67764	1.85163	2.73162	3.59351	1.78032	1.55095	0.241264	2.4899	0.995803	0.659355	0	0.431192	0.558066	0.686231
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044920 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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